mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.6% | 56.4 / 59.6 | 57 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,215,989 | 0 | G | C | 22.2% | 59.1 / 13.6 | 27 | P168R (CCG→CGG) | yqjH | putative siderophore interacting protein |
| * | NC_000913 | 2,462,677 | 0 | A | T | 21.1% | 79.5 / 15.2 | 38 | intergenic (+31/‑335) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| * | NC_000913 | 2,462,678 | 0 | T | A | 21.1% | 81.0 / 17.2 | 38 | intergenic (+32/‑334) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| * | NC_000913 | 2,462,679 | 0 | A | T | 21.1% | 84.1 / 15.1 | 38 | intergenic (+33/‑333) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| Marginal new junction evidence (lowest skew 10 of 30 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 282071 | 33 (0.970) | 8 (0.260) | 8/238 | 2.2 | 17.5% | intergenic (‑88/‑207) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| ? | NC_000913 | = 282106 | 45 (1.450) | intergenic (‑123/‑172) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage | |||||
| * | ? | NC_000913 | = 781222 | 50 (1.470) | 7 (0.210) +ATGT |
7/252 | 2.5 | 12.6% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913 | = 781839 | NA (NA) | intergenic (+187/‑246) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | = 275149 | NA (NA) | 6 (0.180) | 6/258 | 2.9 | 16.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 773026 | 30 (0.890) | coding (1569/1569 nt) | cydA | cytochrome d terminal oxidase, subunit I | |||||
| * | ? | NC_000913 | 4404334 = | 45 (1.320) | 5 (0.150) | 5/248 | 3.1 | 10.1% | intergenic (+30/‑52) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein |
| ? | NC_000913 | 4404361 = | 46 (1.420) | intergenic (+57/‑25) | hflC/yjeT | HflB protease modulator specific for phage lambda cII repressor/DUF2065 family protein | |||||
| * | ? | NC_000913 | = 3906213 | 58 (1.710) | 5 (0.150) | 5/248 | 3.1 | 8.4% | coding (355/837 nt) | bglG | transcriptional antiterminator of the bgl operon |
| ? | NC_000913 | = 3906234 | 54 (1.670) | coding (334/837 nt) | bglG | transcriptional antiterminator of the bgl operon | |||||
| * | ? | NC_000913 | = 835518 | 23 (0.680) | 4 (0.130) | 4/242 | 3.3 | 13.9% | coding (271/963 nt) | ybiB | putative family 3 glycosyltransferase |
| ? | NC_000913 | = 835539 | 28 (0.890) | coding (292/963 nt) | ybiB | putative family 3 glycosyltransferase | |||||
| * | ? | NC_000913 | 307033 = | 27 (0.790) | 4 (0.130) | 4/242 | 3.3 | 13.5% | coding (2300/2526 nt) | ecpC | ECP production outer membrane protein |
| ? | NC_000913 | 307074 = | 26 (0.820) | coding (2259/2526 nt) | ecpC | ECP production outer membrane protein | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 4 (0.130) | 4/242 | 3.3 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 4266888 = | NA (NA) | 4 (0.120) | 4/246 | 3.4 | NA | noncoding (1/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4266918 = | NA (NA) | noncoding (31/97 nt) | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 4011562 = | 45 (1.320) | 4 (0.120) | 4/250 | 3.4 | 7.7% | coding (487/900 nt) | yigM | putative inner membrane EamA‑like transporter |
| ? | NC_000913 | 4011620 = | 53 (1.620) | coding (545/900 nt) | yigM | putative inner membrane EamA‑like transporter | |||||