mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 33.3% | 72.0 / 48.5 | 58 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,285,639 | 0 | C | . | 21.1% | 47.0 / 10.3 | 19 | coding (162/792 nt) | agaD | N‑acetylgalactosamine‑specific enzyme IID component of PTS |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3923705 = | 56 (1.770) | 8 (0.280) | 8/246 | 2.0 | 14.0% | intergenic (‑25/+39) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| ? | NC_000913 | 3923733 = | 47 (1.630) | intergenic (‑53/+11) | rsmG/mnmG | 16S rRNA m(7)G527 methyltransferase, SAM‑dependent; glucose‑inhibited cell‑division protein/5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 | |||||
| * | ? | NC_000913 | 4497944 = | 88 (2.780) | 7 (0.240) | 6/252 | 2.6 | 7.8% | intergenic (+4/‑328) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | NC_000913 | 4497964 = | 83 (2.810) | intergenic (+24/‑308) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | NC_000913 | = 4612024 | 33 (1.040) | 6 (0.200) | 5/254 | 2.9 | 15.8% | intergenic (+23/‑104) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein |
| ? | NC_000913 | = 4612030 | 33 (1.110) | intergenic (+29/‑98) | osmY/ytjA | salt‑inducible putative ABC transporter periplasmic binding protein/uncharacterized protein | |||||
| * | ? | NC_000913 | 4411257 = | 56 (1.770) | 4 (0.140) | 4/250 | 3.2 | 7.3% | intergenic (+6/‑45) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein |
| ? | NC_000913 | 4411284 = | 50 (1.700) | intergenic (+33/‑18) | yjfJ/yjfK | PspA/IM30 family protein/DUF2491 family protein | |||||
| * | ? | NC_000913 | = 4304585 | 57 (1.800) | 4 (0.140) | 4/248 | 3.2 | 6.8% | intergenic (‑182/+27) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein |
| ? | NC_000913 | = 4304591 | 57 (1.960) | intergenic (‑188/+21) | ytcA/yjcS | putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein | |||||
| * | ? | NC_000913 | = 3858205 | 57 (1.800) | 4 (0.140) | 4/244 | 3.2 | 7.1% | coding (200/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein |
| ? | NC_000913 | = 3858228 | 53 (1.850) | coding (177/1494 nt) | yidJ | sulfatase/phosphatase superfamily protein | |||||
| * | ? | NC_000913 | = 420940 | 38 (1.200) | 4 (0.140) | 4/248 | 3.2 | 10.4% | intergenic (+30/‑46) | brnQ/proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease |
| ? | NC_000913 | = 420946 | 34 (1.170) | intergenic (+36/‑40) | brnQ/proY | branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val/proline‑specific permease | |||||
| * | ? | NC_000913 | = 4277035 | 54 (1.700) | 4 (0.130) | 4/254 | 3.3 | 7.6% | coding (1565/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | = 4277043 | 47 (1.580) | coding (1573/1587 nt) | yjcC | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913 | = 4262741 | 65 (2.050) | 4 (0.130) | 4/258 | 3.3 | 6.0% | intergenic (+35/‑99) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G |
| ? | NC_000913 | = 4262755 | 64 (2.110) | intergenic (+49/‑85) | dusA/pspG | tRNA‑dihydrouridine synthase A/phage shock protein G | |||||
| * | ? | NC_000913 | 3884515 = | 63 (1.990) | 4 (0.130) | 4/254 | 3.3 | 6.2% | coding (23/360 nt) | rnpA | protein C5 component of RNase P |
| ? | NC_000913 | 3884538 = | 62 (2.080) | coding (46/360 nt) | rnpA | protein C5 component of RNase P | |||||