Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	65 [0]	[0] 65	[rph]–[rph]	[rph],[rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	62 (1.030)	53/264	0.1	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3816000                                                                                                                                               |                                                                                                                                               acccctgtTTGCTAAGCGCAAATGCAATAACCTGGCGCTGATATGGTTTCATGCTTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCCGCGCCGCCTTCTGCc                                                                                                                                               <  2:580937‑M1/140‑2 (MQ=255) acacCTGCTTGCTAAGCGCAAATTCAATAACCTGGCGGTGATATGGTTTCAGGCGTTCGCTCCTCATCTTACGTTTCCACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTGGCCAGCGCCGCCTTCTGCc                                                                                                                                               <  1:394799‑M1/143‑2 (MQ=255)   acCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTAC‑TTTCTACAG‑ACAAAAAGAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                            >  1:982873‑M1/1‑139 (MQ=255)    ccTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtc                                                                                                                                            <  1:574065‑M1/143‑5 (MQ=255)     cTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAACAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCCTCTGCcgtcc                                                                                                                                           >  2:430223‑M1/1‑138 (MQ=255)      tgctcgccAAGCGCAAATTCAATAACCTGGCGCTGATATGGTATCGCGCCTTCGCCCCTCACCTTACTTTCCGACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcgtccc                                                                                                                                          <  1:320901‑M1/143‑7 (MQ=255)       gcttgctAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTCAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccc                                                                                                                                         >  1:367847‑M1/1‑136 (MQ=255)                gcgcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGACGACTCATCAGTCGCCTTAAAAACCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttca                                                                                                                                >  2:948711‑M1/1‑127 (MQ=255)                  gcAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAACGCCGCCTTCTGCcgtccacagcacttcaat                                                                                                                              >  2:198710‑M1/1‑125 (MQ=255)                    aaaTTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga                                                                                                                            >  1:54587‑M1/1‑123 (MQ=255)                     aactcaaTAACCCGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  1:157046‑M1/140‑22 (MQ=255)                     aaTTCAATAAACGGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTAT‑CAGAACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgat                                                                                                                           <  1:1169484‑M1/143‑22 (MQ=255)                        tCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcg                                                                                                                        <  1:193516‑M1/143‑25 (MQ=255)                         cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc                                                                                                                       <  2:54587‑M1/143‑26 (MQ=255)                                cTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACCAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGTCTTCTGCcgtcccctgcacttcaatgatgcgcccgtctt                                                                                                                <  1:278497‑M1/143‑33 (MQ=255)                                  ggCGCTGACATGGTTTCACGCCTTCGCGCCTCATCTTACTTCTCGACAG‑ACAAAAAAAAGGCGCCTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCCGCcgtccgctgcacttcaatgatgcgcccgtcttcg                                                                                                              <  2:301216‑M1/143‑35 (MQ=255)                                     gcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtc                                                                                                           <  1:633351‑M1/143‑38 (MQ=255)                                      cTGATATGGTTTCATGCCTTCGCACCTCGTCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtca                                                                                                          <  1:160312‑M1/143‑39 (MQ=255)                                          tctggTCTCATGCCTGCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGACTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCagtcccctgcacttcaatgatgcgcccgtcttcggtcatcac                                                                                                      <  2:199302‑M1/141‑43 (MQ=255)                                           atGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcact                                                                                                     >  2:256102‑M1/1‑100 (MQ=255)                                               tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgt                                                                                                 >  1:421968‑M1/1‑96 (MQ=255)                                               tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgggcatcactacgt                                                                                                 >  1:562163‑M1/1‑96 (MQ=255)                                                 tCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               >  1:385557‑M1/1‑94 (MQ=255)                                                 tCATGCCTTCGCTCCTCATCTTACTCCACCCCTA‑ACAGAATAAATGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttc                                                                                               <  1:796617‑M1/143‑50 (MQ=255)                                                   aTGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGTCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtgatcactacgttcat                                                                                             >  1:148138‑M1/1‑92 (MQ=255)                                                   aTGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcat                                                                                             >  2:148481‑M1/1‑92 (MQ=255)                                                     gCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt                                                                                           <  1:1073225‑M1/143‑54 (MQ=255)                                                       cTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcg                                                                                         >  1:1085449‑M1/1‑88 (MQ=255)                                                         tCGCTCCTGATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggt                                                                                       <  2:1106800‑M1/143‑58 (MQ=255)                                                             tcctcATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   >  1:1093090‑M1/1‑82 (MQ=255)                                                             tcctcACCTTACTTTCCTTCAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacatcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   <  1:1062350‑M1/143‑62 (MQ=255)                                                             ccctcacctcacTTTGCTACAG‑ACAAAAAAACGGCGACTCACCAGCCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacatcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctct                                                                                   <  1:1062675‑M1/142‑62 (MQ=255)                                                               ctcATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatttcggtctctgc                                                                                 >  2:838569‑M1/1‑80 (MQ=255)                                                                 cATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg                                                                               <  1:873016‑M1/143‑66 (MQ=255)                                                                   tCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggca                                                                             >  1:148341‑M1/1‑76 (MQ=255)                                                                   tCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtgcatgtcggtctctgcggca                                                                             >  1:212274‑M1/1‑76 (MQ=255)                                                                   tCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAAGCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatatcgatctctgcaaca                                                                             >  2:615851‑M1/1‑76 (MQ=255)                                                                         ttttCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtct                                                                       >  2:595076‑M1/1‑70 (MQ=255)                                                                             cTACAG‑CCAAAACAACGGCGACGCATCAGTCGCCTTAAAACTCCGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacattcatgtcggtctctgcggcagagtcttcaa                                                                   <  2:865952‑M1/143‑78 (MQ=255)                                                                                    aCAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtatt                                                             <  2:787808‑M1/143‑84 (MQ=255)                                                                                      aaaaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtaatcactacgttcatgtcggtctctgcggcggtgtcttcaacgtattcc                                                           >  1:905159‑M1/1‑58 (MQ=255)                                                                                        aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccag                                                         >  1:832282‑M1/1‑56 (MQ=255)                                                                                        aaaaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCAGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctctgcggcagagtcttcaacgtattccag                                                         >  1:311953‑M1/1‑56 (MQ=255)                                                                                         aaaaaGGCGACTCATCTGTCGCCGTAAAACTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccaga                                                        <  1:135116‑M1/143‑89 (MQ=255)                                                                                              ggCGACTCATCAGTCGCCTTAAAAGTCAGTTTGCCAGCGCCGCCTTCTGCcgtctcctgcttttcaatgtttcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgca                                                   <  2:705645‑M1/143‑94 (MQ=255)                                                                                                cgtcgcatccgtcccCGTAACAACCAGTTCGCGTGCGCCGCCTTCTGCcgctccctgcacttcaattatgcgtccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaa                                                 <  2:1124395‑M1/138‑96 (MQ=255)                                                                                                      atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatacgcccgtcttcggccatcactacgttcacaacagtctattttgcagagacttcaccgtattcccgatcgcaaaccgctc                                           >  2:517994‑M1/1‑42 (MQ=255)                                                                                                       tcaCTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgtccatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttc                                          <  1:838569‑M1/143‑103 (MQ=255)                                                                                                         agacgccTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgc                                        <  1:123939‑M1/140‑105 (MQ=255)                                                                                                         aGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgttttccagatcgcaaaccgcttcgc                                        >  1:950121‑M1/1‑39 (MQ=255)                                                                                                          gTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgccccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgcc                                       <  1:284392‑M1/143‑106 (MQ=255)                                                                                                               cTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcacccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttca                                  <  1:736623‑M1/143‑111 (MQ=255)                                                                                                                ttcaaactcaGGTTGCCAGCTCCGCCTCCTCCcgtcccctgcacttcataactacgcccgtcttcggtcatcactacgttcatgtcggtcgctgccgcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcac                                 <  2:191708‑M1/140‑112 (MQ=255)                                                                                                                ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtccctccggcagagtcttcaacgtatcccagatcgcaacccgctcccccgctcac                                 >  1:810031‑M1/1‑32 (MQ=255)                                                                                                                     aaTCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagaggcttcaacggattccagatcgcaaaccgcttcgccgttcacaattc                            >  2:948689‑M1/1‑27 (MQ=255)                                                                                                                        cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgctcttcaatgatgcgcccgtcttcggtcatcactactttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  2:90266‑M1/143‑120 (MQ=255)                                                                                                                        cAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccga                         <  1:256102‑M1/143‑120 (MQ=255)                                                                                                                          gTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctgcgccgagcacactcccgacc                       >  2:805587‑M1/1‑22 (MQ=255)                                                                                                                              gCCAGCGCCGCCTTCTGCcgtccccttcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctccgccagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcccacttccgaccgccc                   >  1:398386‑M1/1‑18 (MQ=255)                                                                                                                                cAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtctgcaacgtagtccacatcgcaaaccccctcgccgcccccacttccgacacaaacc                 >  2:1036360‑M1/1‑16 (MQ=255)                                                                                                                                 aGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactg                <  2:148341‑M1/143‑129 (MQ=255)                                                                                                                                   cgccgcCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagctcgcaaaccgcttcgccgttcacaattccgacagaagctgcg              >  1:1016728‑M1/1‑13 (MQ=255)                                                                                                                                       gccTTCTGCcgtcccctgcacttccatgatgcgcccgtcttcggtcatcacgacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggcta          <  1:1005839‑M1/143‑135 (MQ=255)                                                                                                                                        ccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcaccattccgacagaaactgcggctac         >  1:207481‑M1/1‑8 (MQ=255)                                                                                                                                               ccgtcccctgcccttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatccct  <  2:922226‑M1/143‑143 (MQ=255)                                                                                                                                               |                                                                                                                                               ACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAG‑ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTC  >  NC_000913/3815717‑3816000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑