mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,037,496 | 0 | A | T | 41.9% | 5.3 / 33.9 | 32 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.6% | 78.1 / 17.0 | 52 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 46 (1.150) | 3 (0.080) | 3/266 | 5.7 | 6.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 48 (1.280) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3814427 | 37 (0.920) | 9 (0.240) | 3/268 | 5.8 | 20.0% | intergenic (+40/‑67) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor |
| ? | NC_000913 | = 3814432 | 37 (0.980) | intergenic (+45/‑62) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor | |||||
| * | ? | NC_000913 | 465407 = | 43 (1.070) | 3 (0.080) | 3/274 | 5.9 | 6.6% | coding (141/696 nt) | queC | 7‑cyano‑7‑deazaguanine (preQ0) synthase; queuosine biosynthesis |
| ? | NC_000913 | 465460 = | 44 (1.140) | coding (88/696 nt) | queC | 7‑cyano‑7‑deazaguanine (preQ0) synthase; queuosine biosynthesis | |||||