mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4522458 = | 155 (1.070) | 4 (0.030) | 4/500 | NT | 2.9% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | NC_000913 | 4522501 = | 122 (0.880) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | NC_000913 | 4516891 = | 166 (1.150) | 7 (0.050) | 7/502 | NT | 4.2% | coding (827/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | 4516925 = | 158 (1.130) | coding (793/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | NC_000913 | = 3968672 | 169 (1.170) | 4 (0.030) | 4/500 | NT | 2.4% | coding (757/1104 nt) | wecA | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase |
| ? | NC_000913 | = 3968690 | 164 (1.180) | coding (775/1104 nt) | wecA | UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase | |||||
| * | ? | NC_000913 | = 3607682 | 124 (0.860) | 3 (0.020) | 3/516 | NT | 2.4% | coding (1232/2199 nt) | zntA | zinc, cobalt and lead efflux system |
| ? | NC_000913 | 3607686 = | 120 (0.840) | coding (1236/2199 nt) | zntA | zinc, cobalt and lead efflux system | |||||
| * | ? | NC_000913 | = 3498081 | 110 (0.760) | 5 (0.040) | 5/502 | NT | 4.4% | coding (254/1374 nt) | cysG | fused siroheme synthase 1,3‑dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase |
| ? | NC_000913 | = 3498086 | 110 (0.790) | coding (259/1374 nt) | cysG | fused siroheme synthase 1,3‑dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase | |||||
| * | ? | NC_000913 | 3327193 = | 184 (1.270) | 6 (0.040) | 6/502 | NT | 3.3% | coding (472/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent |
| ? | NC_000913 | 3327230 = | 179 (1.280) | coding (435/630 nt) | rlmE | 23S rRNA U2552 2'‑O‑ribose methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | = 3101308 | 156 (1.080) | 4 (0.030) | 4/516 | NT | 2.5% | coding (316/720 nt) | yggN | DUF2884 family putative periplasmic protein |
| ? | NC_000913 | 3101312 = | 153 (1.070) | coding (312/720 nt) | yggN | DUF2884 family putative periplasmic protein | |||||
| * | ? | NC_000913 | = 2662350 | 98 (0.680) | 4 (0.030) | 4/504 | NT | 3.9% | noncoding (42/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2662533 = | 100 (0.710) | noncoding (225/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 1127798 | 136 (0.940) | 3 (0.020) | 3/506 | NT | 2.2% | intergenic (+69/‑41) | yceM/murJ | putative oxidoreductase/putative lipid II flippase |
| ? | NC_000913 | = 1127801 | 136 (0.970) | intergenic (+72/‑38) | yceM/murJ | putative oxidoreductase/putative lipid II flippase | |||||
| * | ? | NC_000913 | = 700782 | 128 (0.890) | 3 (0.020) | 3/504 | NT | 2.4% | coding (813/1221 nt) | nagC | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| ? | NC_000913 | 700792 = | 124 (0.890) | coding (803/1221 nt) | nagC | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor | |||||