| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 62,822 | Δ16 bp | coding (428‑443/2907 nt) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 62821 | 1 (0.020) | 40 (0.830) | 38/278 | 0.2 | 97.6% | coding (444/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| ? | NC_000913 | 62838 = | 1 (0.020) | coding (427/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase | |||||
GGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/62694‑62821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62838‑62978 gcATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTT < 1:465656/141‑1 ATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCG > 1:717374/1‑143 TCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCCACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATCCGGAACTGTCCGCTGG > 2:573031/1‑143 CGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGGGGTGTTGCCCACAGACGCGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAAT > 1:408921/1‑143 GCTTCAATGGTTTACCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATAT < 1:266403/143‑1 AATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACG > 1:871781/1‑143 TTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTGCGCTGCCCGGCACACGCACCTGTTCGCTGGAATATTTACGCGCGC > 1:53555/1‑143 TTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGC < 1:534818/143‑1 CTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGACCTGTTCGCTGGAATATTTACGCGCGCGATAAC > 1:884057/1‑143 TAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCCACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGCCCGGCATACGGAGCTGTTCGCTGGAATATTTACGCGCGCGcccacg > 2:42206/1‑137 ACCCACTTCGCCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGAATCCGGAACTGTTCTATGGAATATTTACGCGCGCGATAACGCAG < 1:845963/143‑1 CCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCCTACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCG > 2:523526/1‑143 CCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCG > 1:140464/1‑143 CACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGGACCGGGCGCTGGGATAGTTACGCGCGCGAGAACGCGGCGC > 2:475073/1‑143 tcCGTCAGCCAGCGGGACGCGCGGCGCGTGGCGGCGACCAACATCACGAGCGATGTTGAGCTGATGCGGGATCATGCTGGTACGCCGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAA < 2:718389/141‑1 TCAGCCAACAGGACGCGCGCCGCGGAGCGTCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCACAGCGG > 2:778971/1‑143 CAGCCGGGAGGACGCTCGGGGCGTGGCGCCGACCAACATCATGAGCGATGTTGAGCTGAGGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGT < 2:875394/143‑1 AGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATA < 1:42528/143‑1 GCGCGGCGCGGGGCGGCGACCAGCATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAAT < 2:454826/143‑1 CGCGTGGCGGCGACCATCATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCC < 2:454827/143‑1 CGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAAC > 2:631908/1‑143 GACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTGCATACGGTCAATCTGCCCGGCAAACAGAC > 1:355990/1‑143 ccTGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATATCGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCG < 1:535572/141‑1 TGAGCGATGGGCAGGTGGCGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTGCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGT < 2:557637/143‑1 GCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGTAACTGTTCGCTGGAGTATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTG < 2:717374/143‑1 GATGTTGAGCTGATGCGGGAGCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATAGTGACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCT < 2:646934/143‑1 TGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGA > 2:122635/1‑143 TGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGA > 1:298007/1‑143 GTTGATCGGATCCGGGAGCGGGCTGGTACGCCGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAA < 1:603849/143‑1 TTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAAC < 1:262985/143‑1 TTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAAC > 1:674750/1‑143 GCTGATGCGGGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGAGAGTCCTGCGGTTTGCTGAACACaa > 1:213647/1‑141 TGCGGGAGCAGGCGGGTACGCTGACCGGCATACGGAACTGGTCGCTGGAATAGTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCCCACGGACTTTCCTGCGGTTTGCTGAACACCAGTTTG < 2:635256/143‑1 CGGGGTCAGGCTGGGACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCT < 2:557729/143‑1 GGATCAGGCTGGTACGCTGACCGGCATACGGAACTGTTCGCGTGAAGATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTAT > 1:457943/1‑143 gcacGCTGGCACGCCGACCGGCATACGGAACTGTGCGCGGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAA < 2:596943/139‑1 CTGGTACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAA > 1:705244/1‑143 TACGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTT > 1:596023/1‑143 CGCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTAGCAAGGAACACTTCA > 1:223179/1‑143 GCTGACCGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCAC > 1:713668/1‑143 CGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGCCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCCGTCTGCTATCAACGAAAACTTCACGCAGGG > 2:696335/1‑143 GGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/62694‑62821‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62838‑62978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |