| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 62,822 | Δ16 bp | coding (428‑443/2907 nt) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 62821 | 1 (0.020) | 40 (0.830) | 38/278 | 0.2 | 97.6% | coding (444/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| ? | NC_000913 | 62838 = | 1 (0.020) | coding (427/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase | |||||
AATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62710‑62978 | gcatcatcccggcttcaatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGtt < 1:465656‑M2/15‑1 (MQ=255) atcatcccggcttcaatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCg > 1:717374‑M2/127‑143 (MQ=255) tcccggcttcaatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgacccacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATCCGGAACTGTCCGCTgg > 2:573031‑M2/123‑143 (MQ=255) cggcttcaatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgaggggtgttgcccacagacgcgatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAat > 1:408921‑M2/120‑143 (MQ=255) gcttcaatggtttaccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAatat < 1:266403‑M2/26‑1 (MQ=255) aatggttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTAcg > 1:871781‑M2/113‑143 (MQ=255) ccACTTCGTCAGCCAGAAGGACGCGCGGCGCGTGGCGACGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTAcgc < 1:299352/143‑1 (MQ=255) ttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtgcgctgcccgGCACACGCACCTGTTCGCTGGAATATTTAcgcgcgc > 1:53555‑M2/108‑143 (MQ=255) ttttccctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTAcgcgcgc < 1:534818‑M2/36‑1 (MQ=255) ctaaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGACCTGTTCGCTGGAATATTTACGCGCGCGATAAc > 1:884057‑M2/102‑143 (MQ=255) taaacccacttcgtcagccagcaggacgcgcggcgcgtggcggcgacccacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgcccgGCATACGGAGCTGTTCGCTGGAAtatttacgcgcgcgcccacg > 2:42206‑M2/101‑137 (MQ=255) acccacttcgccagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGAATCCGGAACTGTTCTATGGAATATTTACGCGCGCGATAACGCAg < 1:845963‑M2/46‑1 (MQ=255) ccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCCTACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAgcg > 2:523526‑M2/96‑143 (MQ=255) ccacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAgcg > 1:140464‑M2/96‑143 (MQ=255) cacttcgtcagccagcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGGACCGGGCGCTGGGATAGTTACGCGCGCGAGAACGCGgcgc > 2:475073‑M2/95‑143 (MQ=255) tccgtcagccagcgggacgcgcggcgcgtggcggcgaccaacatcacgagcgatgttgagctgatgcgggatcatgctggtacgccgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCaaa < 2:718389‑M2/52‑1 (MQ=255) tcagccaacaggacgcgcgccgcggagcgtcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCACAGCgg > 2:778971‑M2/88‑143 (MQ=255) cagccgggaggacgctcggggcgtggcgccgaccaacatcatgagcgatgttgagctgaggcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGt < 2:875394‑M2/57‑1 (MQ=255) agcaggacgcgcggcgcgtggcggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATa < 1:42528‑M2/62‑1 (MQ=255) gcgcggcgcggggcggcgaccagcatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAAt < 2:454826‑M2/70‑1 (MQ=255) cgcgtggcggcgaccatcatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGccc < 2:454827‑M2/76‑1 (MQ=255) cggcgaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAAc > 2:631908‑M2/61‑143 (MQ=255) gaccaacatcatgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTGCATACGGTCAATCTGCCCGGCAAACAGAc > 1:355990‑M2/57‑143 (MQ=255) cctgagcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATATCGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCg < 1:535572‑M2/96‑1 (MQ=255) tgagcgatgggcaggtggcgcgggatcaggctggtacgctgaccgGCATACGGAACTGTGCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGt < 2:557637‑M2/98‑1 (MQ=255) gcgatgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGTAACTGTTCGCTGGAGTATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTg < 2:717374‑M2/101‑1 (MQ=255) gatgttgagctgatgcgggagcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATAGTGACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCt < 2:646934‑M2/103‑1 (MQ=255) tgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGa > 2:122635‑M2/39‑143 (MQ=255) tgttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGa > 1:298007‑M2/39‑143 (MQ=255) gttgatcggatccgggagcgggctggtacgccgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGaa < 1:603849‑M2/106‑1 (MQ=255) ttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAac < 1:262985‑M2/107‑1 (MQ=255) ttgagctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAac > 1:674750‑M2/37‑143 (MQ=255) gctgatgcgggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGAGAGTCCTGCGGTTTGCTgaacacaa > 1:213647‑M2/33‑141 (MQ=255) tgcgggagcaggcgggtacgctgaccgGCATACGGAACTGGTCGCTGGAATAGTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCCCACGGACTTTCCTGCGGTTTGCTGAACACCAGTTTg < 2:635256‑M2/116‑1 (MQ=255) cggggtcaggctgggacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCt < 2:557729‑M2/118‑1 (MQ=255) ggatcaggctggtacgctgaccgGCATACGGAACTGTTCGCGTGAAGATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTAt > 1:457943‑M2/24‑143 (MQ=255) gcacgctggcacgccgaccgGCATACGGAACTGTGCGCGGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCaa < 2:596943‑M2/123‑1 (MQ=255) ctggtacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGaaa > 1:705244‑M2/16‑143 (MQ=255) tacgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACtt > 1:596023‑M2/12‑143 (MQ=255) cgctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTAGCAAGGAACACTTCa > 1:223179‑M2/10‑143 (MQ=255) cgctgaccGGCATACGGAACTGTTCGCTGGGATATCTACGCGCGCGATAACGCAGCGCAAAGCGGGCCATGGGGTCAATCTGCCTGGCAAAGAGAGCGCCCCGCGGTTTGCACAAGACCCGTGTGCCGTCAAGGAAACCGTCa > 2:146343/8‑143 (MQ=255) gctgaccgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCAc > 1:713668‑M2/9‑143 (MQ=255) cgGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGCCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCCGTCTGCTATCAACGAAAACTTCACGCAggg > 2:696335‑M2/3‑143 (MQ=255) | AATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGGAAAACTTCACGCAGGG > NC_000913/62710‑62978 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |