| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 62,822 | Δ16 bp | coding (428‑443/2907 nt) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 62821 | 1 (0.020) | 40 (0.830) | 38/278 | 0.2 | 97.6% | coding (444/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| ? | NC_000913 | 62838 = | 1 (0.020) | coding (427/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase | |||||
GGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGG > NC_000913/62694‑62962 | gcatcatcccGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgtt < 1:465656‑M1/141‑16 (MQ=255) atcatcCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcg > 1:717374‑M1/1‑126 (MQ=255) tcCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCCACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatccggaactgtccgctgg > 2:573031‑M1/1‑122 (MQ=255) cGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGGGGTGTTGCCCACAGACGCGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaat > 1:408921‑M1/1‑119 (MQ=255) gCTTCAATGGTTTACCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatat < 1:266403‑M1/143‑27 (MQ=255) aaTGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacg > 1:871781‑M1/1‑112 (MQ=255) ttttCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTGCGCTGCCCGgcacacgcacctgttcgctggaatatttacgcgcgc > 1:53555‑M1/1‑107 (MQ=255) ttttCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgc < 1:534818‑M1/143‑37 (MQ=255) cTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggacctgttcgctggaatatttacgcgcgcgataac > 1:884057‑M1/1‑101 (MQ=255) tAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCCACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGCCCGgcatacggagctgttcgctggaatatttacgcgcgcgcccacg > 2:42206‑M1/1‑100 (MQ=255) aCCCACTTCGCCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgaatccggaactgttctatggaatatttacgcgcgcgataacgcag < 1:845963‑M1/143‑47 (MQ=255) ccACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcctacggaactgttcgctggaatatttacgcgcgcgataacgcagcg > 2:523526‑M1/1‑95 (MQ=255) ccACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcg > 1:140464‑M1/1‑95 (MQ=255) ccACTTCGTCAGCCAGAAGGACGCGCGGCGCGTGGCGACGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTAcgc < 1:299352/143‑1 (MQ=255) cACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacgggaccgggcgctgggatagttacgcgcgcgagaacgcggcgc > 2:475073‑M1/1‑94 (MQ=255) tccgtCAGCCAGCGGGACGCGCGGCGCGTGGCGGCGACCAACATCACGAGCGATGTTGAGCTGATGCGGGATCATGCTGGTACGCCGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaa < 2:718389‑M1/141‑53 (MQ=255) tCAGCCAACAGGACGCGCGCCGCGGAGCGTCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcacagcgg > 2:778971‑M1/1‑87 (MQ=255) cagccgggAGGACGCTCGGGGCGTGGCGCCGACCAACATCATGAGCGATGTTGAGCTGAGGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggt < 2:875394‑M1/143‑58 (MQ=255) agcagGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccata < 1:42528‑M1/143‑63 (MQ=255) gcgcggcgcgGGGCGGCGACCAGCATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaat < 2:454826‑M1/143‑71 (MQ=255) cgcgTGGCGGCGACCATCATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgccc < 2:454827‑M1/143‑77 (MQ=255) cggcgACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaac > 2:631908‑M1/1‑60 (MQ=255) gACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtgcatacggtcaatctgcccggcaaacagac > 1:355990‑M1/1‑56 (MQ=255) cctgaGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgatatcgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcg < 1:535572‑M1/141‑97 (MQ=255) tGAGCGATGGGCAGGTGGCGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgtgcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggt < 2:557637‑M1/143‑99 (MQ=255) gCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacgtaactgttcgctggagtatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttg < 2:717374‑M1/143‑102 (MQ=255) gATGTTGAGCTGATGCGGGAGCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatagtgacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgct < 2:646934‑M1/143‑104 (MQ=255) tGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctga > 2:122635‑M1/1‑38 (MQ=255) tGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctga > 1:298007‑M1/1‑38 (MQ=255) gTTGATCGGATCCGGGAGCGGGCTGGTACGCCGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaa < 1:603849‑M1/143‑107 (MQ=255) ttGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaac < 1:262985‑M1/143‑108 (MQ=255) ttGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaac > 1:674750‑M1/1‑36 (MQ=255) gCTGATGCGGGATCAGGCTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagagagtcctgcggtttgctgaacacaa > 1:213647‑M1/1‑32 (MQ=255) tGCGGGAGCAGGCGGGTACGCTGACCGgcatacggaactggtcgctggaatagttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcccacggactttcctgcggtttgctgaacaccagtttg < 2:635256‑M1/143‑117 (MQ=255) cGGGGTCAGGCTGGGACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgct < 2:557729‑M1/143‑119 (MQ=255) ggATCAGGCTGGTACGCTGACCGgcatacggaactgttcgcgtgaagatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctat > 1:457943‑M1/1‑23 (MQ=255) gcacgctggCACGCCGACCGgcatacggaactgtgcgcgggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaa < 2:596943‑M1/139‑124 (MQ=255) cTGGTACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaaggaaa > 1:705244‑M1/1‑15 (MQ=255) tACGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaaggaaaactt > 1:596023‑M1/1‑11 (MQ=255) cGCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctagcaaggaacacttca > 1:223179‑M1/1‑9 (MQ=255) gCTGACCGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggtcaatctgcccggcaaacagacggtcctgcggtttgctgaacaccagtttgctatcaaggaaaacttcac > 1:713668‑M1/1‑8 (MQ=255) cGgcatacggaactgttcgctggaatatttacgcgcgcgataacgcagcgcaaagcggtccatacggccaatctgcccggcaaacagacggtcctgcggtttgctgaacacccgtctgctatcaacgaaaacttcacgcaggg > 2:696335‑M1/1‑2 (MQ=255) | GGATCATCCCGGCTTCAATGGTTTTCCCTAAACCCACTTCGTCAGCCAGCAGGACGCGCGGCGCGTGGCGGCGACCAACATCATGAGCGATGTTGAGCTGATGCGGGATCAGGCTGGTACGCTGACCGCGCAGGCCGCTGTACGGCATACGGAACTGTTCGCTGGAATATTTACGCGCGCGATAACGCAGCGCAAAGCGGTCCATACGGTCAATCTGCCCGGCAAACAGACGGTCCTGCGGTTTGCTGAACACCAGTTTGCTATCAAGG > NC_000913/62694‑62962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |