mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 18 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4062810 | 195 (1.250) | 3 (0.020) | 3/412 | NT | 1.5% | coding (564/1266 nt) | yihN | MFS transporter family protein |
| ? | NC_000913 | = 4062816 | 199 (1.330) | coding (570/1266 nt) | yihN | MFS transporter family protein | |||||
| * | ? | NC_000913 | = 3982339 | 145 (0.930) | 3 (0.020) | 3/416 | NT | 2.0% | intergenic (+67/‑36) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg |
| ? | NC_000913 | = 3982353 | 160 (1.060) | intergenic (+81/‑22) | yifK/argX | putative APC family amino acid transporter/tRNA‑Arg | |||||
| * | ? | NC_000913 | 3736308 = | 213 (1.360) | 4 (0.030) | 4/402 | NT | 2.1% | noncoding (155/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913 | 3736340 = | 165 (1.130) | intergenic (+183/+13) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
| * | ? | NC_000913 | 3100618 = | 210 (1.350) | 3 (0.020) | 3/418 | NT | 1.4% | coding (111/1047 nt) | ansB | periplasmic L‑asparaginase 2 |
| ? | NC_000913 | 3100639 = | 206 (1.360) | coding (90/1047 nt) | ansB | periplasmic L‑asparaginase 2 | |||||
| * | ? | NC_000913 | 2796365 = | 145 (0.930) | 4 (0.030) | 4/410 | NT | 2.9% | coding (422/450 nt) | ygaU | uncharacterized protein |
| ? | NC_000913 | 2796386 = | 134 (0.900) | coding (401/450 nt) | ygaU | uncharacterized protein | |||||
| * | ? | NC_000913 | = 2766337 | 206 (1.320) | 3 (0.020) | 3/416 | NT | 1.4% | coding (420/1074 nt) | rnlA | CP4‑57 prophage; RNase LS |
| ? | NC_000913 | = 2766341 | 209 (1.380) | coding (424/1074 nt) | rnlA | CP4‑57 prophage; RNase LS | |||||
| * | ? | NC_000913 | 2713819 = | 170 (1.090) | 3 (0.020) | 3/408 | NT | 1.9% | coding (924/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | 2713920 = | 142 (0.960) | coding (1025/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | = 2604989 | 153 (0.980) | 4 (0.030) | 4/412 | NT | 2.6% | coding (179/1440 nt) | hyfD | hydrogenase 4, membrane subunit |
| ? | NC_000913 | = 2604993 | 149 (1.000) | coding (183/1440 nt) | hyfD | hydrogenase 4, membrane subunit | |||||
| * | ? | NC_000913 | = 2240541 | 149 (0.950) | 3 (0.020) | 3/426 | NT | 2.0% | intergenic (‑193/+87) | mglB/galS | methyl‑galactoside transporter subunit/galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
| ? | NC_000913 | = 2240546 | 147 (0.950) | intergenic (‑198/+82) | mglB/galS | methyl‑galactoside transporter subunit/galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor | |||||
| * | ? | NC_000913 | 1722616 = | 153 (0.980) | 3 (0.020) | 3/408 | NT | 2.0% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | NC_000913 | = 1722612 | 153 (1.030) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||