| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1465092 = | 46 (1.070) | 3 (0.080) | 3/262 | 6.2 | 7.1% | intergenic (+31/+73) | paaY/ynbG | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein |
| ? | NC_000913 | 1465125 = | 36 (0.910) | intergenic (+64/+40) | paaY/ynbG | thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1465235‑1465092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctgctttatTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGT > NC_000913/1465125‑1465262 aaACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTA < 2:574234/141‑1 ATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATACTTATTTATAATGAGAATGTGGATTTAATTTGTACTTT > 1:116616/1‑143 AATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATTTTGTGTCTACAGATTTAATTTGTAATTTATATTATATACACAAT > 2:160639/1‑143 ATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATCATGCGAATGTGGTTTTTATTTGTGATTTATATTAGATACCCAATTTATATGGTTCAa > 1:248864/1‑142 CTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATTCACAATTTATATATTTCATGGTCTTTTTTTTTTCTCCTGAATTATAA > 2:768422/1‑143 TTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTACTTTGTAATTTATATTATATACACAATTTATCTATTTCATGGTCTTTTTTTATTCATCTGAGTTATATTTGT > 1:48672/1‑143 AGACCATGAAATATATAAATTGTGTATATAATATAAATTACAAATTAAAACCACATTCTCATTATAAATAATTATATGATGAAAAAACGGTATGAATTAATACTCAAATAAATAAAGCAGAGCTTAAACATAACTCTGCTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1465235‑1465092‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctctgctttatTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGT > NC_000913/1465125‑1465262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |