New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1465092 =	46 (1.070)	3 (0.080)	3/262	6.2	7.1%	intergenic (+31/+73)	paaY/ynbG	thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
	?	NC_000913	1465125 =	36 (0.910)					intergenic (+64/+40)	paaY/ynbG	thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGT  >  NC_000913/1464983‑1465262                                                                                                                                               |                                                                                                                                          tCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCtttatt                                                                                                                                           >  1:32854/1‑143 (MQ=255) tCAAGTCGAGCCAGTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGCATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCtttatt                                                                                                                                           <  1:677739/143‑1 (MQ=255)        gAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGa                                                                                                                                    <  2:405640/143‑1 (MQ=255)         aGCCATTGCTGGATATTGATTCTGGCAGGAAACGCGTGGTATTTGATTAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAGAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAg                                                                                                                                   <  1:42162/143‑1 (MQ=255)           tgatggCGGGGCATTGTACCTGCAACGAAACGCCTGGTATTTGATGATAATCTGCGACCGCAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGATTTATGTTTAAGCTCTGCTTTATTTATTTGAGTa                                                                                                                                 <  2:213242/138‑1 (MQ=255)                gCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTACTTCTAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAAt                                                                                                                            >  2:367567/1‑143 (MQ=255)                    gAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCAt                                                                                                                        >  2:627337/1‑143 (MQ=255)                    gAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCAt                                                                                                                        >  2:32531/1‑143 (MQ=255)                             ccTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGttttt                                                                                                               <  1:313604/143‑1 (MQ=255)                              cTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTAGTTGAGTATTAATTCATACCGtttttt                                                                                                              >  2:406334/1‑143 (MQ=255)                               tGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTtc                                                                                                             <  1:662086/143‑1 (MQ=255)                               tGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTtc                                                                                                             <  1:651889/143‑1 (MQ=255)                               tGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTACTTATTTGAGTATTAATTCATAACGTTATTtc                                                                                                             >  2:119069/1‑143 (MQ=255)                                ggCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTtca                                                                                                            <  1:198825/143‑1 (MQ=255)                                    ggAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTcatcat                                                                                                        >  1:301730/1‑143 (MQ=255)                                    ggAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACAGTTTTTTcatcat                                                                                                        >  2:257328/1‑143 (MQ=255)                                            cTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCGTACCGTTTTTTCATCATCTActtat                                                                                                >  2:365597/1‑143 (MQ=255)                                            cTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAattat                                                                                                >  1:624246/1‑143 (MQ=255)                                            cTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAattat                                                                                                >  2:781306/1‑143 (MQ=255)                                             tGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAattatt                                                                                               >  1:512433/1‑143 (MQ=255)                                               gTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAAttattta                                                                                             >  1:631212/1‑143 (MQ=255)                                                                      gAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAAttt                                                                      <  1:551927/143‑1 (MQ=255)                                                                       aaaCAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTg                                                                     >  2:255909/1‑143 (MQ=255)                                                                             tAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAAttt                                                               >  2:185631/1‑143 (MQ=255)                                                                               aCAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATttat                                                             >  2:354982/1‑143 (MQ=255)                                                                                        aaaTTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATCATAAGAATGTGGTTTTAATTTGTCATTtatattatatct                                                    >  1:562229/1‑141 (MQ=255)                                                                                        aaaTTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATACTGAGAATGTGGTTTTAATTTGTAATTTATATTATATac                                                    >  2:458136/1‑143 (MQ=255)                                                                                           ttattTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATAcaca                                                 >  1:731102/1‑143 (MQ=255)                                                                                               tttGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAAttt                                             >  2:411610/1‑143 (MQ=255)                                                                                                    cccTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTtatata                                        <  2:32854/143‑1 (MQ=255)                                                                                                     ccTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTatatat                                       >  1:220125/1‑143 (MQ=255)                                                                                                      cTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATAtt                                      <  2:301730/143‑1 (MQ=255)                                                                                                       tttAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATGttt                                     >  1:377138/1‑143 (MQ=255)                                                                                                       tttAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATAttt                                     >  1:160766/1‑143 (MQ=255)                                                                                                               taAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGttt                             >  2:574234/1‑141 (MQ=255)                                                                                                                              tttAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATGTTATTATTTATAATGAGAATGTGTTGTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTg              >  1:361734/1‑143 (MQ=255)                                                                                                                                      ctGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATTCACAATTTATATATTTCATGGTCTTTTTTTTTTCTCCTGAATTATaa      >  2:768422/1‑143 (MQ=255)                                                                                                                                          tttatttaTTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTACTTTGTAATTTATATTATATACACAATTTATCTATTTCATGGTCTTTTTTTATTCATCTGAGTTATATTtgt  >  1:48672/1‑143 (MQ=255)                                                                                                                                               |                                                                                                                                          TCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTTCATGGTCTTTTTTTATTCACCTGAATTATAATTGT  >  NC_000913/1464983‑1465262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.