New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1465092 =46 (1.070)3 (0.080) 3/262 6.2 7.1% intergenic (+31/+73) paaY/ynbG thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
?NC_000913 1465125 = 36 (0.910)intergenic (+64/+40) paaY/ynbG thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCTGGTGACACGCTGTAAGCAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTT  >  NC_000913/1464952‑1465227
                                                                                                                                            |                                                                                                                                       
tGCTGGTGACACGCTGTAAGCAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAAAGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATtata                                                                                                                                       >  1:125252/1‑143 (MQ=255)
   tGGTGACACGCGGTAGGCAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAg                                                                                                                                    <  1:716630/143‑1 (MQ=255)
     gTGACACGCTGTAAGCAGACGTTACATCAAGTCGAGCCATTGCGGGCAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCa                                                                                                                                  >  1:652880/1‑143 (MQ=255)
        acacGCTGTAAGCAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCagag                                                                                                                               >  1:337092/1‑143 (MQ=255)
              tGTAAGCAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGGTACGt                                                                                                                         >  1:435283/1‑143 (MQ=255)
                  aGCAGACGTTACATCAAGTCGCGCCATTGCGGGAAATTGAACCTGGTAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTaa                                                                                                                     <  1:201955/143‑1 (MQ=255)
                   gCAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGGTATGTTTAAg                                                                                                                    >  1:165218/1‑143 (MQ=255)
                    cAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTCATTATAAAGCAGAGTTATGTTTAGGc                                                                                                                   >  1:7998/1‑143 (MQ=255)
                       aCGTTACATGAAGTCGAGCCATTGCGGGAAATGGAACCTGGCAGGAAACGCCTGGTATTTGATGATAAGCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGctct                                                                                                                <  2:50064/143‑1 (MQ=255)
                          ttACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCt                                                                                                             >  2:575454/1‑143 (MQ=255)
                            aCATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCttt                                                                                                           >  1:405425/1‑143 (MQ=255)
                              aTCAAGTCGAGCCGTGGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCtttat                                                                                                         <  2:461988/143‑1 (MQ=255)
                               tCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCtttatt                                                                                                        >  1:32854/1‑143 (MQ=255)
                               tCAAGTCGAGCCAGTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGCATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCtttatt                                                                                                        <  1:677739/143‑1 (MQ=255)
                                      gAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGa                                                                                                 <  2:405640/143‑1 (MQ=255)
                                       aGCCATTGCTGGATATTGATTCTGGCAGGAAACGCGTGGTATTTGATTAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAGAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAg                                                                                                <  1:42162/143‑1 (MQ=255)
                                         tgatggCGGGGCATTGTACCTGCAACGAAACGCCTGGTATTTGATGATAATCTGCGACCGCAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGATTTATGTTTAAGCTCTGCTTTATTTATTTGAGTa                                                                                              <  2:213242/138‑1 (MQ=255)
                                              gCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTACTTCTAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAAt                                                                                         >  2:367567/1‑143 (MQ=255)
                                                  gAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCAt                                                                                     >  2:32531/1‑143 (MQ=255)
                                                  gAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCAt                                                                                     >  2:627337/1‑143 (MQ=255)
                                                           ccTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGttttt                                                                            <  1:313604/143‑1 (MQ=255)
                                                            cTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTAGTTGAGTATTAATTCATACCGtttttt                                                                           >  2:406334/1‑143 (MQ=255)
                                                             tGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTtc                                                                          <  1:662086/143‑1 (MQ=255)
                                                             tGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTtc                                                                          <  1:651889/143‑1 (MQ=255)
                                                             tGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTACTTATTTGAGTATTAATTCATAACGTTATTtc                                                                          >  2:119069/1‑143 (MQ=255)
                                                              ggCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTtca                                                                         <  1:198825/143‑1 (MQ=255)
                                                                  ggAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTcatcat                                                                     >  1:301730/1‑143 (MQ=255)
                                                                  ggAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACAGTTTTTTcatcat                                                                     >  2:257328/1‑143 (MQ=255)
                                                                          cTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCGTACCGTTTTTTCATCATCTActtat                                                             >  2:365597/1‑143 (MQ=255)
                                                                          cTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAattat                                                             >  2:781306/1‑143 (MQ=255)
                                                                          cTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAattat                                                             >  1:624246/1‑143 (MQ=255)
                                                                           tGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAattatt                                                            >  1:512433/1‑143 (MQ=255)
                                                                             gTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAAttattta                                                          >  1:631212/1‑143 (MQ=255)
                                                                                                    gAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAAttt                                   <  1:551927/143‑1 (MQ=255)
                                                                                                     aaaCAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTg                                  >  2:255909/1‑143 (MQ=255)
                                                                                                           tAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAAttt                            >  2:185631/1‑143 (MQ=255)
                                                                                                             aCAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATttat                          >  2:354982/1‑143 (MQ=255)
                                                                                                                      aaaTTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATCATAAGAATGTGGTTTTAATTTGTCATTtatattatatct                 >  1:562229/1‑141 (MQ=255)
                                                                                                                      aaaTTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATACTGAGAATGTGGTTTTAATTTGTAATTTATATTATATac                 >  2:458136/1‑143 (MQ=255)
                                                                                                                         ttattTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATAcaca              >  1:731102/1‑143 (MQ=255)
                                                                                                                             tttGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAAttt          >  2:411610/1‑143 (MQ=255)
                                                                                                                                  cccTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTtatata     <  2:32854/143‑1 (MQ=255)
                                                                                                                                   ccTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTatatat    >  1:220125/1‑143 (MQ=255)
                                                                                                                                    cTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATAtt   <  2:301730/143‑1 (MQ=255)
                                                                                                                                     tttAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATGttt  >  1:377138/1‑143 (MQ=255)
                                                                                                                                     tttAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATAttt  >  1:160766/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                       
TGCTGGTGACACGCTGTAAGCAGACGTTACATCAAGTCGAGCCATTGCGGGAAATTGAACCTGGCAGGAAACGCCTGGTATTTGATGAGAATCTGCGACCGAAACAGTAACAGATGTAAAATTATTTTGTCCCTTTAATTATAAAGCAGAGTTATGTTTAAGCTCTGCTTTATTTATTTGAGTATTAATTCATACCGTTTTTTCATCATATAATTATTTATAATGAGAATGTGGTTTTAATTTGTAATTTATATTATATACACAATTTATATATTT  >  NC_000913/1464952‑1465227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.