New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2731579	54 (1.260)	5 (0.130)	5/262	5.0	9.0%	intergenic (‑422/+21)	rrsG/clpB	16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
	?	NC_000913	= 2731583	51 (1.290)					intergenic (‑426/+17)	rrsG/clpB	16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTGCACGT  >  NC_000913/2731439‑2731720                                                                                                                                              |                                                                                                                                              ccGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCg                                                                                                                                             >  1:518710/1‑143 (MQ=255)   gtgtCAGTGGTGGCGCATTATAGGGAGTTATTCTGGCTTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGaa                                                                                                                                           <  1:24723/143‑1 (MQ=255)    tgtCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAg                                                                                                                                          <  1:350546/143‑1 (MQ=255)        gctgatcgcgcTTTATAGGGGGTTATTCCGGCCTGACAAGGGAAACATATAAAAACTTTATCGTTCGCTCTCTTGTCAGGCAAAACATCTTGAATATAGTCTTTTCCGTCTAACTTAGAGACAAA‑AACGAGCCCCGAAGGGCt                                                                                                                                      <  2:35328/136‑1 (MQ=255)        aGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCt                                                                                                                                      >  1:556999/1‑143 (MQ=255)          tggtggCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAACAATATAAAAACTTTATCGGTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAACGGCTCg                                                                                                                                    >  2:130864/1‑143 (MQ=255)               gctgaTTATAGGGAGTTCTTCCGGCCTAACAAGCGAAAAATATAAAAACTTTATCTTTCGCTCACCTTCCAGGCAAAACCTCTTACATATAGTCTTTTCCTTCTAACTTATACACAAA‑AACGAGCCCCGAAGGGCTCGTTTTa                                                                                                                               <  2:44385/139‑1 (MQ=255)                cgcATTATAGGGACTTGTTCCGGTCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTACATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTAt                                                                                                                              <  2:360943/143‑1 (MQ=255)                 gcATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTGCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATc                                                                                                                             <  1:585388/143‑1 (MQ=255)                              ttATTCCGGCCTGACAAGCGAAACATATAAAAACTTTATCGTTCGCTCACTTGTCAGGCAAAACATCTTAAATATAGTCGTTTCCGTCTAACTTATAGACAAA‑AACGAGCCGCGAAGGGCTCGTGTTATCATTTACGGCACgg                                                                                                                >  2:18463/1‑143 (MQ=255)                               tATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACgcc                                                                                                               >  2:628461/1‑141 (MQ=255)                                aTTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCGTTTCCGTCTAACTTATAGACAAA‑AACGAGCACCGAAAGGCTCGTTGTATAATTAACTGGACGGCg                                                                                                              >  2:646634/1‑143 (MQ=255)                                        cTGAAAAGAGAAAATTATACAAACGTTATCGTTTCCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCg                                                                                                      <  1:20480/143‑1 (MQ=255)                                          gACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGt                                                                                                    >  2:777801/1‑143 (MQ=255)                                             aaGCGAAACATATAAAAACTTTACCGGTCGCTCACTTTTCAGGCAAAACATCTGAAATATAGTCGTTTCCGTCTAACTTATAGACAAACAAGTAGCGGTG‑GTCGCTCTTTTTATCATTTACTGGACGGCGACAATCCGGTCtt                                                                                                 <  2:556999/143‑1 (MQ=255)                                             aaGCGAAAAATATAAACACTTTCTCGTTCGCTCACTTGTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGTGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCtt                                                                                                 <  2:487687/143‑1 (MQ=255)                                             aaGCGAAAAATATAAAAACTTAATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTATCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTcgt                                                                                                 >  2:609287/1‑141 (MQ=255)                                              aGCTAAAAATATAATAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTc                                                                                                <  1:701694/143‑1 (MQ=255)                                              aGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTc                                                                                                <  1:366467/143‑1 (MQ=255)                                              aGCGAAAAATAGAAAAACTTTAGCGTTCGCTCACTTTGCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTc                                                                                                <  1:239912/143‑1 (MQ=255)                                                cGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCAt                                                                                              <  2:286011/143‑1 (MQ=255)                                                 gAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCAtt                                                                                             <  1:754691/143‑1 (MQ=255)                                                 gAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGACAAATCATCTTAAATATAGTCTTTTCCGTCTAACTTTTATCCAAA‑ATCTAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCAtt                                                                                             <  1:761584/143‑1 (MQ=255)                                                  aaaaaTATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTa                                                                                            >  2:389656/1‑143 (MQ=255)                                                               cTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATCGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGaa                                                                               <  2:36288/143‑1 (MQ=255)                                                                tttGTCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATGGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAAt                                                                              >  2:682029/1‑143 (MQ=255)                                                                     cGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACtt                                                                         <  2:326600/143‑1 (MQ=255)                                                                         cGCTCACTTTTCAGGCAAAACATGATAAAGGGAGTCTTCTCCGTCTTACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTAcc                                                                     <  1:695672/143‑1 (MQ=255)                                                                          gCTCACTTGTCAGGAAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTAccc                                                                    <  2:91831/143‑1 (MQ=255)                                                                            tCACTTTTCAGGCAAAACATCTTCCATATAGTCTTTTCCGTCTAACTTATAGACACG‑AACGAGCCCCGAACGGCTCGTTTTATCATTTACTGGACGGCCACCATCCGGTCTTGATTCACTTACCGGCGAATCGCtttcaccgc                                                                  >  2:362672/1‑137 (MQ=255)                                                                            tCACTTTGCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCgg                                                                  <  2:332201/143‑1 (MQ=255)                                                                              aCTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGaa                                                                <  2:497608/143‑1 (MQ=255)                                                                                ttttCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAAcc                                                              >  1:705146/1‑143 (MQ=255)                                                                                  ttCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCaa                                                            <  2:703115/143‑1 (MQ=255)                                                                                  tgcAGGCAACACATCTTAAATATAGTCTTTTCCGTCTAACTTCTAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCaa                                                            <  2:456688/141‑1 (MQ=255)                                                                                    cAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTCTATGTTTTACGGGCGGGCGACAATCCGGTCCTCATTAACTTCCAGGCGAATCGCTTTACCCGGAACCACtt                                                          >  2:633579/1‑143 (MQ=255)                                                                                        cAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGCCGGCGACAATCCGGTCTTCATTACCTTCCAGGCGCATCACCTTACCCGGAACCGATTcccc                                                      >  2:779451/1‑143 (MQ=255)                                                                                                  tAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTAtt                                            <  1:260839/143‑1 (MQ=255)                                                                                                         aGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGCCAATCCGGTCTTCATTAACTTCCCGGCGAATCACTTTACCCGGAACATATGACTCTGACCGTATTTGCtgtg                                     >  2:304900/1‑143 (MQ=255)                                                                                                             ttttCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAGTTCTCCAGACAGTATTTGCTGTGCCAg                                 >  1:323887/1‑143 (MQ=255)                                                                                                               ttCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGGCCGTATTTGCTGTGCCAGCg                               >  1:538041/1‑143 (MQ=255)                                                                                                                    tCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCCGACAGTATTTGCTGTGCCAGCGGGttt                          >  2:782661/1‑143 (MQ=255)                                                                                                                    tCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGttt                          >  1:754549/1‑143 (MQ=255)                                                                                                                        acgtataGACAAG‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGa                      <  1:558944/140‑1 (MQ=255)                                                                                                                        aCTTACACACAAC‑AACGAGCCCCGAAGGGCTCGTTTTATCATCTCCTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGa                      <  2:527922/143‑1 (MQ=255)                                                                                                                         cTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGtttacagc                     >  2:248199/1‑138 (MQ=255)                                                                                                                              aGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgct                >  1:169031/1‑143 (MQ=255)                                                                                                                                aCAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgctgc              >  1:782846/1‑143 (MQ=255)                                                                                                                                aCAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgctgc              >  2:544168/1‑143 (MQ=255)                                                                                                                                  aaa‑aaCGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgctgcgg            >  1:580066/1‑141 (MQ=255)                                                                                                                                        cGACCCCCTAAGGGCTCGTTTTATCATTTCCTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTg       <  2:780207/143‑1 (MQ=255)                                                                                                                                             cccGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGCATCACTTTACCCGGAACCAATTCCCTAGACATTTTTTGCTTTGCTATCGGGTTTTCGATTTTTTGCTTAAtttcttgt  >  1:551963/1‑137 (MQ=255)                                                                                                                                             cccGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGCCAGTATTGGCTGTGCCAGCGCGGTTTCGACCCGCTGCTGAATCGCACgg  >  2:103899/1‑142 (MQ=255)                                                                                                                                             cccGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTGCACGt  >  1:298231/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                              CCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTGCACGT  >  NC_000913/2731439‑2731720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.