New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2731579	54 (1.260)	5 (0.130)	5/262	5.0	9.0%	intergenic (‑422/+21)	rrsG/clpB	16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
	?	NC_000913	= 2731583	51 (1.290)					intergenic (‑426/+17)	rrsG/clpB	16S ribosomal RNA of rrnG operon/protein disaggregation chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTGCACGTTT  >  NC_000913/2731441‑2731722                                                                                                                                                |                                                                                                                                            gtgtCAGTGGTGGCGCATTATAGGGAGTTATTCTGGCTTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGaa                                                                                                                                             <  1:24723/143‑1 (MQ=255)  tgtCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAg                                                                                                                                            <  1:350546/143‑1 (MQ=255)      gctgatcgcgcTTTATAGGGGGTTATTCCGGCCTGACAAGGGAAACATATAAAAACTTTATCGTTCGCTCTCTTGTCAGGCAAAACATCTTGAATATAGTCTTTTCCGTCTAACTTAGAGACAAA‑AACGAGCCCCGAAGGGCt                                                                                                                                        <  2:35328/136‑1 (MQ=255)      aGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCt                                                                                                                                        >  1:556999/1‑143 (MQ=255)        tggtggCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAACAATATAAAAACTTTATCGGTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAACGGCTCg                                                                                                                                      >  2:130864/1‑143 (MQ=255)             gctgaTTATAGGGAGTTCTTCCGGCCTAACAAGCGAAAAATATAAAAACTTTATCTTTCGCTCACCTTCCAGGCAAAACCTCTTACATATAGTCTTTTCCTTCTAACTTATACACAAA‑AACGAGCCCCGAAGGGCTCGTTTTa                                                                                                                                 <  2:44385/139‑1 (MQ=255)              cgcATTATAGGGACTTGTTCCGGTCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTACATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTAt                                                                                                                                <  2:360943/143‑1 (MQ=255)               gcATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTGCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATc                                                                                                                               <  1:585388/143‑1 (MQ=255)                            ttATTCCGGCCTGACAAGCGAAACATATAAAAACTTTATCGTTCGCTCACTTGTCAGGCAAAACATCTTAAATATAGTCGTTTCCGTCTAACTTATAGACAAA‑AACGAGCCGCGAAGGGCTCGTGTTATCATTTACGGCACgg                                                                                                                  >  2:18463/1‑143 (MQ=255)                             tATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACgcc                                                                                                                 >  2:628461/1‑141 (MQ=255)                              aTTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCGTTTCCGTCTAACTTATAGACAAA‑AACGAGCACCGAAAGGCTCGTTGTATAATTAACTGGACGGCg                                                                                                                >  2:646634/1‑143 (MQ=255)                                      cTGAAAAGAGAAAATTATACAAACGTTATCGTTTCCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCg                                                                                                        <  1:20480/143‑1 (MQ=255)                                        gACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGt                                                                                                      >  2:777801/1‑143 (MQ=255)                                           aaGCGAAACATATAAAAACTTTACCGGTCGCTCACTTTTCAGGCAAAACATCTGAAATATAGTCGTTTCCGTCTAACTTATAGACAAACAAGTAGCGGTG‑GTCGCTCTTTTTATCATTTACTGGACGGCGACAATCCGGTCtt                                                                                                   <  2:556999/143‑1 (MQ=255)                                           aaGCGAAAAATATAAACACTTTCTCGTTCGCTCACTTGTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGTGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCtt                                                                                                   <  2:487687/143‑1 (MQ=255)                                           aaGCGAAAAATATAAAAACTTAATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTATCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTcgt                                                                                                   >  2:609287/1‑141 (MQ=255)                                            aGCTAAAAATATAATAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTc                                                                                                  <  1:701694/143‑1 (MQ=255)                                            aGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTc                                                                                                  <  1:366467/143‑1 (MQ=255)                                            aGCGAAAAATAGAAAAACTTTAGCGTTCGCTCACTTTGCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTc                                                                                                  <  1:239912/143‑1 (MQ=255)                                              cGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCAt                                                                                                <  2:286011/143‑1 (MQ=255)                                               gAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCAtt                                                                                               <  1:754691/143‑1 (MQ=255)                                               gAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGACAAATCATCTTAAATATAGTCTTTTCCGTCTAACTTTTATCCAAA‑ATCTAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCAtt                                                                                               <  1:761584/143‑1 (MQ=255)                                                aaaaaTATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTa                                                                                              >  2:389656/1‑143 (MQ=255)                                                             cTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATCGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGaa                                                                                 <  2:36288/143‑1 (MQ=255)                                                              tttGTCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATGGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAAt                                                                                >  2:682029/1‑143 (MQ=255)                                                                   cGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACtt                                                                           <  2:326600/143‑1 (MQ=255)                                                                       cGCTCACTTTTCAGGCAAAACATGATAAAGGGAGTCTTCTCCGTCTTACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTAcc                                                                       <  1:695672/143‑1 (MQ=255)                                                                        gCTCACTTGTCAGGAAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTAccc                                                                      <  2:91831/143‑1 (MQ=255)                                                                          tCACTTTTCAGGCAAAACATCTTCCATATAGTCTTTTCCGTCTAACTTATAGACACG‑AACGAGCCCCGAACGGCTCGTTTTATCATTTACTGGACGGCCACCATCCGGTCTTGATTCACTTACCGGCGAATCGCtttcaccgc                                                                    >  2:362672/1‑137 (MQ=255)                                                                          tCACTTTGCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCgg                                                                    <  2:332201/143‑1 (MQ=255)                                                                            aCTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGaa                                                                  <  2:497608/143‑1 (MQ=255)                                                                              ttttCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAAcc                                                                >  1:705146/1‑143 (MQ=255)                                                                                ttCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCaa                                                              <  2:703115/143‑1 (MQ=255)                                                                                tgcAGGCAACACATCTTAAATATAGTCTTTTCCGTCTAACTTCTAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCaa                                                              <  2:456688/141‑1 (MQ=255)                                                                                  cAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTCTATGTTTTACGGGCGGGCGACAATCCGGTCCTCATTAACTTCCAGGCGAATCGCTTTACCCGGAACCACtt                                                            >  2:633579/1‑143 (MQ=255)                                                                                      cAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGCCGGCGACAATCCGGTCTTCATTACCTTCCAGGCGCATCACCTTACCCGGAACCGATTcccc                                                        >  2:779451/1‑143 (MQ=255)                                                                                                tAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTAtt                                              <  1:260839/143‑1 (MQ=255)                                                                                                       aGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGCCAATCCGGTCTTCATTAACTTCCCGGCGAATCACTTTACCCGGAACATATGACTCTGACCGTATTTGCtgtg                                       >  2:304900/1‑143 (MQ=255)                                                                                                           ttttCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAGTTCTCCAGACAGTATTTGCTGTGCCAg                                   >  1:323887/1‑143 (MQ=255)                                                                                                             ttCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGGCCGTATTTGCTGTGCCAGCg                                 >  1:538041/1‑143 (MQ=255)                                                                                                                  tCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCCGACAGTATTTGCTGTGCCAGCGGGttt                            >  2:782661/1‑143 (MQ=255)                                                                                                                  tCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGttt                            >  1:754549/1‑143 (MQ=255)                                                                                                                      acgtataGACAAG‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGa                        <  1:558944/140‑1 (MQ=255)                                                                                                                      aCTTACACACAAC‑AACGAGCCCCGAAGGGCTCGTTTTATCATCTCCTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGa                        <  2:527922/143‑1 (MQ=255)                                                                                                                       cTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGtttacagc                       >  2:248199/1‑138 (MQ=255)                                                                                                                            aGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgct                  >  1:169031/1‑143 (MQ=255)                                                                                                                              aCAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgctgc                >  2:544168/1‑143 (MQ=255)                                                                                                                              aCAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgctgc                >  1:782846/1‑143 (MQ=255)                                                                                                                                aaa‑aaCGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATctgctgcgg              >  1:580066/1‑141 (MQ=255)                                                                                                                                      cGACCCCCTAAGGGCTCGTTTTATCATTTCCTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTg         <  2:780207/143‑1 (MQ=255)                                                                                                                                           cccGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGCATCACTTTACCCGGAACCAATTCCCTAGACATTTTTTGCTTTGCTATCGGGTTTTCGATTTTTTGCTTAAtttcttgt    >  1:551963/1‑137 (MQ=255)                                                                                                                                           cccGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGCCAGTATTGGCTGTGCCAGCGCGGTTTCGACCCGCTGCTGAATCGCACgg    >  2:103899/1‑142 (MQ=255)                                                                                                                                           cccGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTGCACGt    >  1:298231/1‑143 (MQ=255)                                                                                                                                             cGAAGGGCTCGTTTTATCATTTACTGGCCGGCGACAATCCGGTCTTCATTACCTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTGTCGACCTGCTGCTGAGTCGCACGttt  >  2:492900/1‑143 (MQ=255)                                                                                                                                             cGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCGCCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTGCACGttt  >  2:399314/1‑143 (MQ=255)                                                                                                                                             cGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCCGACAGTATTTGATGAGCCGGCGGCTTGTCGACCTGCTGCTGAGTTGCAGGttt  >  2:341180/1‑143 (MQ=255)                                                                                                                                                |                                                                                                                                            GTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGCGAAAAATATAAAAACTTTATCGTTCGCTCACTTTTCAGGCAAAACATCTTAAATATAGTCTTTTCCGTCTAACTTATAGACAAA‑AACGAGCCCCGAAGGGCTCGTTTTATCATTTACTGGACGGCGACAATCCGGTCTTCATTAACTTCCAGGCGAATCACTTTACCCGGAACCAATTCACCAGACAGTATTTGCTGTGCCAGCGGGTTTTCGATCTGCTGCTGAATTGCACGTTT  >  NC_000913/2731441‑2731722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.