Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,299,499 Δ1,199 bp intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1299499 1300697–1299500 2–1199 63 [0] [0] 64 ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994980 (0.000)60 (1.190) 49/274 0.1 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

AATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299357‑1299638
                                                                                                                                             |                                                                                                                                            
aaTTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAa                                                                                                                                             >  2:598730‑M1/1‑142 (MQ=255)
        ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatc                                                                                                                                     >  2:720621‑M1/1‑134 (MQ=255)
        ttagttaTAAGGATTGCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTACTTCCACTGCCTTTGGTAGAGAAAAGTGCTAAataatcatc                                                                                                                                     >  2:889953‑M1/1‑134 (MQ=255)
         tagttaTAAGGTGTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatca                                                                                                                                    <  2:800580‑M1/143‑11 (MQ=255)
          cgttatAATGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaa                                                                                                                                   <  1:736192‑M1/142‑12 (MQ=255)
           gttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaat                                                                                                                                  <  2:312309‑M1/143‑13 (MQ=255)
            tcacaaggatTTCCTTAACTGCTCCTCCTCACCAGCATGTTATTGTCCCCACATCATAATCCTTTGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatt                                                                                                                                 <  1:219683‑M1/139‑14 (MQ=255)
                  ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaa                                                                                                                           >  2:181335‑M1/1‑124 (MQ=255)
                      ttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACCTCCTAATCCTGGGCTTCCTGCAGACTAATTCAAATGATATTATTAATTCCACCGCCTTCGGTAGAGGCAAGTGCTAAatattaatcaattgttatattat                                                                                                                       >  2:884664‑M1/1‑120 (MQ=255)
                       tCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattatt                                                                                                                      <  1:734588‑M1/143‑25 (MQ=255)
                         cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgt                                                                                                                    >  1:319231‑M1/1‑117 (MQ=255)
                          ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                                                                                                                   <  2:73313‑M1/143‑28 (MQ=255)
                             aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttacattattgtgcat                                                                                                                >  2:637623‑M1/1‑113 (MQ=255)
                                 cTTCTCCTCATCATCATTTTATTTTCGTCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCTACTGTCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                                                                                            <  2:399501‑M1/143‑35 (MQ=255)
                                       ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                      <  1:612682‑M1/143‑41 (MQ=255)
                                        tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattatgcatttcactactga                                                                                                     >  2:302369‑M1/1‑102 (MQ=255)
                                        tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGATAGAGGAAAGTACTAAataagaataaattgttaagttattgtcgctttcacatgtag                                                                                                     >  2:616038‑M1/1‑102 (MQ=255)
                                                 tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaat                                                                                            >  1:586146‑M1/1‑93 (MQ=255)
                                                   ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGGATTAGGTACAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                          >  1:700789‑M1/1‑91 (MQ=255)
                                                   ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAAAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactgaaacagtaatca                                                                                          >  2:277840‑M1/1‑91 (MQ=255)
                                                    tATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcag                                                                                         <  1:91296‑M1/143‑54 (MQ=255)
                                                      ttttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATCTCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                       <  1:950112‑M1/143‑56 (MQ=255)
                                                       tttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa                                                                                      <  2:640246‑M1/143‑57 (MQ=255)
                                                        ttggatacatcataaTCCTTTGCTTGATGAAGAATAATTTAAATTATATTATTAATTCCACTGTCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgtatttcactactggaactgtaatcagaaaa                                                                                     <  2:905367‑M1/137‑58 (MQ=255)
                                                            ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                 >  1:147239‑M1/1‑82 (MQ=255)
                                                             cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatccattgttaaaatattgtgcatttcactactcgagctgtcatcagaaaacagag                                                                                >  2:890161‑M1/1‑81 (MQ=255)
                                                                   atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgc                                                                          >  2:761720‑M1/1‑75 (MQ=255)
                                                                   atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGGAGAGGACTGTGTCCAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgc                                                                          >  1:701065‑M1/1‑75 (MQ=255)
                                                                              gttgCAGCAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatct                                                               <  2:615403‑M1/142‑80 (MQ=255)
                                                                               ttgttgAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGTAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactcgaactgtaatcagaaaagatagacatgcttagccaatctc                                                              <  2:173197‑M1/143‑81 (MQ=255)
                                                                                tGCTGAAGAATAATTGAAACGAGATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctct                                                             <  1:351551‑M1/143‑82 (MQ=255)
                                                                                  cTGAAGAATAATTCAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcctttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctat                                                           <  1:63567‑M1/143‑84 (MQ=255)
                                                                                     aagaaTAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttg                                                        <  1:347878‑M1/143‑87 (MQ=255)
                                                                                        aataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                     <  2:586146‑M1/143‑90 (MQ=255)
                                                                                        aataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatatgatt                                                     <  1:579627‑M1/143‑90 (MQ=255)
                                                                                            atTGAAATGATATTATTAATTCCACTTGCTTTGGTTGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggacctgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                 <  2:908534‑M1/143‑94 (MQ=255)
                                                                                              tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttaggcaatctctatttgattgaattg                                               >  2:806791‑M1/1‑48 (MQ=255)
                                                                                                 aaggataTTCGTAATTCCACTGGCTTTGGTACAGGAAAGTGCTAAacaagaatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                            <  1:595277‑M1/140‑99 (MQ=255)
                                                                                                 aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                            <  1:587484‑M1/143‑99 (MQ=255)
                                                                                                    gATATTATTCACTCCACTGCCGTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagat                                         <  1:847549‑M1/143‑102 (MQ=255)
                                                                                                       tttattaaTTCCCATCCCTTTTGTAGAGGAAAGTCCTAAataacaataaattgataaattattgtgcatgtgactacttgaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtt                                      <  2:336978‑M1/142‑105 (MQ=255)
                                                                                                         tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttg                                    >  1:699319‑M1/1‑37 (MQ=255)
                                                                                                           ttaATTGCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagaaatgcttagccaatctctatttgattgaattgaaagatgtctgtg                                  >  2:174068‑M1/1‑35 (MQ=255)
                                                                                                           ttaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaccttattttgcatttaactaatggaactgtaatcagaaaagatagacatgcttagacaatatttatttgattgaattgcaagatgtttgtt                                  >  1:367130‑M1/1‑35 (MQ=255)
                                                                                                           ttaAGTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgtt                                  <  1:838259‑M1/143‑109 (MQ=255)
                                                                                                              aTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                               <  1:191951‑M1/143‑112 (MQ=255)
                                                                                                                tCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttggttgaattgaaagatgtttgttaaggc                             >  2:36826‑M1/1‑30 (MQ=255)
                                                                                                                    cggccTTTGGGGGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                         <  1:207710‑M1/141‑118 (MQ=255)
                                                                                                                    cTGCCATTGGTAGAGGAAAGTGCTAAataataaacaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                         <  1:70235‑M1/143‑118 (MQ=255)
                                                                                                                     tGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgga                        >  1:98890‑M1/1‑25 (MQ=255)
                                                                                                                         tttGGTAAAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattggattgaattgaaagatgttagataaggcatgcatgca                    >  2:529043‑M1/1‑21 (MQ=255)
                                                                                                                           tGGGAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaag                  <  2:349199‑M1/143‑125 (MQ=255)
                                                                                                                             gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaacgatgtttgttaagccatggatgcaagct                >  2:327442‑M1/1‑17 (MQ=255)
                                                                                                                             gTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgttggttaaggcatgtatgcaagcc                >  2:67322‑M1/1‑17 (MQ=255)
                                                                                                                              tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagcta               >  1:426195‑M1/1‑16 (MQ=255)
                                                                                                                              tAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagcta               >  1:705008‑M1/1‑16 (MQ=255)
                                                                                                                                 agGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatag            >  1:677098‑M1/1‑13 (MQ=255)
                                                                                                                                     tagTGCTAAataatactcaattgttaaattattgtggatttcactactggaactgtaatcagaaaagatagacatgtttagccaatctgtatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc        <  2:815888‑M1/142‑135 (MQ=255)
                                                                                                                                     aattgctAAataataatcaattgttaaattattgtgcatttcactagtggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc        <  2:885441‑M1/140‑135 (MQ=255)
                                                                                                                                      aGTGCTAAataataatcaattgttagattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattct       >  1:774383‑M1/1‑8 (MQ=255)
                                                                                                                                          cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgata   <  1:46520‑M1/143‑140 (MQ=255)
                                                                                                                                          cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgata   <  1:720621‑M1/143‑140 (MQ=255)
                                                                                                                                           tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctaattgcttgaattgaaagaagtttgttaaggcacggatgcaagaaataaatactgatac  >  2:665294‑M1/1‑3 (MQ=255)
                                                                                                                                             |                                                                                                                                            
AATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299357‑1299638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.