| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2775873 = | 33 (0.840) | 3 (0.080) | 3/268 | 5.7 | 8.7% | intergenic (+57/‑46) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein |
| ? | NC_000913 | 2775896 = | 32 (0.860) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGCCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2776020‑2775873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgtTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT > NC_000913/2775896‑2776037 CGGCCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCT > 1:56193/1‑143 CCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAACTAACGCCCGCGGCGCTGGCTGGC > 1:393966/1‑143 CAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATGCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTGCGTGAATAAAACACGCAAGCGGCGATGGCTGGCG > 2:300273/1‑143 AATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAA < 1:106367/102‑1 AATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAA > 2:106367/1‑102 AAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCGGCct > 2:476397/1‑141 TGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTGGTTGCTTAGTGGTCCGAACTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCCCTCTGGC > 2:662360/1‑143 TTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACCGGTACGCATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTCGGCACCAT > 2:455930/1‑143 TTTTTGATTCACGGAGACATACCCATGACAACACAGACACAGTACGTCCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT < 2:35653/143‑1 CGGCCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2776020‑2775873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgtTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT > NC_000913/2775896‑2776037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |