New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2775873 =	33 (0.840)	3 (0.080)	3/268	5.7	8.7%	intergenic (+57/‑46)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein
	?	NC_000913	2775896 =	32 (0.860)					intergenic (+80/‑23)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCG  >  NC_000913/2775736‑2776010                                                                                                                                          |                                                                                                                                          aaCTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACgcca                                                                                                                                      <  1:78117/143‑1 (MQ=255) aaCTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACgcca                                                                                                                                      <  1:293262/143‑1 (MQ=255)         aCCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATcgc                                                                                                                              <  1:658464/143‑1 (MQ=255)             gACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCt                                                                                                                          >  2:341761/1‑143 (MQ=255)                     tgcacgTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTCCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGtttt                                                                                                                  <  2:74384/138‑1 (MQ=255)                       aaGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCAATCGCCGCTGGCGtttttt                                                                                                                >  1:554369/1‑143 (MQ=255)                             ttAACCGCTATATCCACATGTCAGGCATTCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCAc                                                                                                          <  1:547388/143‑1 (MQ=255)                                 gcGCTATATGCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGgag                                                                                                      <  1:494946/142‑1 (MQ=255)                                  cGCTATATCCACAGGTCAGACATCCGCACCGACACCTTCCCCCGCTGACTCAGAATCATTTACCAGCAACATCTCACCCTCCCAAACGCGCCTTATTACCTAATACACCAGCAATCCCCACTAACGCTTATCATTCAcaccaa                                                                                                     >  2:434678/1‑138 (MQ=255)                                    cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACCTTTCACCTTCCCAAACGCGCTTTATTCCCTCATACGACCGCCATCGCCGCTGGCGTGATGCAGTCACGGAGTCa                                                                                                   >  2:398687/1‑143 (MQ=255)                                    cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCACACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACa                                                                                                   >  1:35653/1‑143 (MQ=255)                                              aGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGac                                                                                         <  2:168302/143‑1 (MQ=255)                                                gTCCGGCAGCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaa                                                                                       <  2:345855/143‑1 (MQ=255)                                                     gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTGTTATTCAAGACGACATACCCACGGCAacacag                                                                                  >  2:5725/1‑143 (MQ=38)                                                     gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTGACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAccacag                                                                                  >  1:682048/1‑143 (MQ=255)                                                            cACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTCTTTATTCACCGAAACATACTCATGACAACACAGACACAGt                                                                           >  2:575592/1‑143 (MQ=255)                                                              cagACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTGCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGATATACCCATGACAACACAGACACAGTAc                                                                         <  2:76074/141‑1 (MQ=255)                                                                    ccgtCCCCCGCTGTCTCCGAGGCATTTACCGGCGACAGGTCGCCTTCCCGAACGCGCTTCATTACCTCGGACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACAGTCCCTTGTCAACACAGACACAGTACGACCTc                                                                   <  2:351666/140‑1 (MQ=21)                                                                                   tCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCCCGGAGACATACCCATGACCACACCGCCCCCGTCCCGCCTCGTTCCCGCttcccgc                                                    >  1:17488/1‑137 (MQ=25)                                                                                    ccGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                   <  1:655554/143‑1 (MQ=255)                                                                                           aTTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACCACACAGACACAGTACGACCTCGTACCCCATAGCGGCTCCGaact                                            >  2:378451/1‑141 (MQ=25)                                                                                            tttACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAttt                                           <  1:460648/143‑1 (MQ=255)                                                                                              tACCAGCAACACTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttga                                         <  1:613291/143‑1 (MQ=255)                                                                                                   gccgcATTCCACCTTCCCAGACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGCGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttgagttga                                    <  2:348520/139‑1 (MQ=255)                                                                                                        aTTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTGTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAGTTGGGTTGAGCGTa                               >  1:85202/1‑143 (MQ=255)                                                                                                             aCCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTACCGGACCCGACTTTGAGTTGACCGTAACGCa                          >  1:348440/1‑143 (MQ=255)                                                                                                              ccTGCCCGAACGCGCGTTATTGCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAg                         <  1:169884/143‑1 (MQ=255)                                                                                                               cTTCCCACACGCGCTTGATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTGATTCACGGAGCCATACCCATGACCACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAgg                        <  1:281972/143‑1 (MQ=25)                                                                                                               cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                   <  1:57179/116‑1 (MQ=255)                                                                                                               cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                   >  2:57179/1‑116 (MQ=255)                                                                                                                       gcgcgcgTTCTTTCCTCATACGCCAGCCATCGCCGCTGGCGCTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGAt                <  2:485946/142‑1 (MQ=255)                                                                                                                            cTTTATTCCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACa           <  1:575592/143‑1 (MQ=255)                                                                                                                                     cTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCg  >  1:224904/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                          AACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCG  >  NC_000913/2775736‑2776010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.