New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2775873 =	33 (0.840)	3 (0.080)	3/268	5.7	8.7%	intergenic (+57/‑46)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein
	?	NC_000913	2775896 =	32 (0.860)					intergenic (+80/‑23)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related/CP4‑57 prophage; putative antirestriction protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT  >  NC_000913/2775756‑2776037                                                                                                                                             |                                                                                                                                              tgcacgTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTCCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGtttt                                                                                                                                             <  2:74384/138‑1 (MQ=255)   aaGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCAATCGCCGCTGGCGtttttt                                                                                                                                           >  1:554369/1‑143 (MQ=255)         ttAACCGCTATATCCACATGTCAGGCATTCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCAc                                                                                                                                     <  1:547388/143‑1 (MQ=255)             gcGCTATATGCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGgag                                                                                                                                 <  1:494946/142‑1 (MQ=255)              cGCTATATCCACAGGTCAGACATCCGCACCGACACCTTCCCCCGCTGACTCAGAATCATTTACCAGCAACATCTCACCCTCCCAAACGCGCCTTATTACCTAATACACCAGCAATCCCCACTAACGCTTATCATTCAcaccaa                                                                                                                                >  2:434678/1‑138 (MQ=255)                cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACCTTTCACCTTCCCAAACGCGCTTTATTCCCTCATACGACCGCCATCGCCGCTGGCGTGATGCAGTCACGGAGTCa                                                                                                                              >  2:398687/1‑143 (MQ=255)                cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCACACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACa                                                                                                                              >  1:35653/1‑143 (MQ=255)                          aGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGac                                                                                                                    <  2:168302/143‑1 (MQ=255)                            gTCCGGCAGCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaa                                                                                                                  <  2:345855/143‑1 (MQ=255)                                 gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTGTTATTCAAGACGACATACCCACGGCAacacag                                                                                                             >  2:5725/1‑143 (MQ=38)                                 gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTGACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAccacag                                                                                                             >  1:682048/1‑143 (MQ=255)                                        cACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTCTTTATTCACCGAAACATACTCATGACAACACAGACACAGt                                                                                                      >  2:575592/1‑143 (MQ=255)                                          cagACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTGCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGATATACCCATGACAACACAGACACAGTAc                                                                                                    <  2:76074/141‑1 (MQ=255)                                                ccgtCCCCCGCTGTCTCCGAGGCATTTACCGGCGACAGGTCGCCTTCCCGAACGCGCTTCATTACCTCGGACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACAGTCCCTTGTCAACACAGACACAGTACGACCTc                                                                                              <  2:351666/140‑1 (MQ=21)                                                               tCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCCCGGAGACATACCCATGACCACACCGCCCCCGTCCCGCCTCGTTCCCGCttcccgc                                                                               >  1:17488/1‑137 (MQ=25)                                                                ccGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                                              <  1:655554/143‑1 (MQ=255)                                                                       aTTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACCACACAGACACAGTACGACCTCGTACCCCATAGCGGCTCCGaact                                                                       >  2:378451/1‑141 (MQ=25)                                                                        tttACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAttt                                                                      <  1:460648/143‑1 (MQ=255)                                                                          tACCAGCAACACTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttga                                                                    <  1:613291/143‑1 (MQ=255)                                                                               gccgcATTCCACCTTCCCAGACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGCGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttgagttga                                                               <  2:348520/139‑1 (MQ=255)                                                                                    aTTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTGTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAGTTGGGTTGAGCGTa                                                          >  1:85202/1‑143 (MQ=255)                                                                                         aCCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTACCGGACCCGACTTTGAGTTGACCGTAACGCa                                                     >  1:348440/1‑143 (MQ=255)                                                                                          ccTGCCCGAACGCGCGTTATTGCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAg                                                    <  1:169884/143‑1 (MQ=255)                                                                                           cTTCCCACACGCGCTTGATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTGATTCACGGAGCCATACCCATGACCACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAgg                                                   <  1:281972/143‑1 (MQ=25)                                                                                           cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                                              <  1:57179/116‑1 (MQ=255)                                                                                           cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                                              >  2:57179/1‑116 (MQ=255)                                                                                                   gcgcgcgTTCTTTCCTCATACGCCAGCCATCGCCGCTGGCGCTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGAt                                           <  2:485946/142‑1 (MQ=255)                                                                                                        cTTTATTCCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACa                                      <  1:575592/143‑1 (MQ=255)                                                                                                                 cTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCg                             >  1:224904/1‑143 (MQ=255)                                                                                                                       cGCCAGCCATCGCCGCTTGCGTGTTTTATTCACGCAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGCATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTg                       <  2:300273/143‑1 (MQ=255)                                                                                                                        gccagccaGCGCCGCGGGCGTTAGTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTgg                      <  1:393966/143‑1 (MQ=255)                                                                                                                           agccaTCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCg                   <  1:56193/143‑1 (MQ=255)                                                                                                                                       tGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTGGTTGCTTAGTGGTCCGAACTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCCCTCTGGc       >  2:662360/1‑143 (MQ=25)                                                                                                                                            ttttttATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACCGGTACGCATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTCGGCACCAt  >  2:455930/1‑143 (MQ=25)                                                                                                                                            tttttgATTCACGGAGACATACCCATGACAACACAGACACAGTACGTCCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAt  <  2:35653/143‑1 (MQ=255)                                                                                                                                             |                                                                                                                                              TGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT  >  NC_000913/2775756‑2776037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.