mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,348,023 | 0 | G | A | 57.5% | 17.1 / 38.0 | 40 | A20T (GCA→ACA) | npr | phosphohistidinoprotein‑hexose phosphotransferase component of N‑regulated PTS system (Npr) |
| * | NC_000913 | 4,296,060 | 0 | C | T | 43.9% | 20.0 / 62.8 | 67 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 67,887 | 2 | . | T | 38.5% | 18.3 / 65.6 | 39 | coding (451/1503 nt) | araA | L‑arabinose isomerase |
| * | NC_000913 | 67,887 | 1 | . | G | 36.8% | 23.4 / 63.7 | 39 | coding (451/1503 nt) | araA | L‑arabinose isomerase |
| Marginal new junction evidence (lowest skew 10 of 23 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1097282 | 10 (0.220) | 7 (0.170) | 6/268 | 4.9 | 40.7% | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097286 | 11 (0.260) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097105 | NA (NA) | 7 (0.170) | 6/268 | 4.9 | 42.6% | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097282 | 10 (0.220) | intergenic (+453/+283) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097463 | 6 (0.130) | 7 (0.170) | 5/268 | 5.4 | 55.3% | intergenic (+634/+102) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097467 | NA (NA) | intergenic (+638/+98) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097294 | 13 (0.290) | 7 (0.170) | 5/268 | 5.4 | 46.3% | intergenic (+465/+271) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097455 | 4 (0.090) | intergenic (+626/+110) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097101 | 30 (0.670) | 7 (0.170) | 5/268 | 5.4 | 26.3% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097286 | 11 (0.260) | intergenic (+457/+279) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 1097101 | 30 (0.670) | 7 (0.170) | 5/268 | 5.4 | 19.8% | intergenic (+272/+464) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097105 | NA (NA) | intergenic (+276/+460) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 3423665 = | NA (NA) | 6 (0.140) | 5/280 | 5.6 | 10.8% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | = 4040683 | 50 (1.120) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913 | 4542682 = | 37 (0.830) | 4 (0.100) | 4/266 | 5.9 | 8.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 52 (1.240) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 1826807 | 45 (1.010) | 4 (0.090) | 4/272 | 6.0 | 8.2% | coding (117/969 nt) | astE | succinylglutamate desuccinylase |
| ? | NC_000913 | = 1826851 | 46 (1.070) | coding (73/969 nt) | astE | succinylglutamate desuccinylase | |||||
| * | ? | NC_000913 | 279669 = | NA (NA) | 4 (0.090) | 4/274 | 6.0 | 100% | noncoding (262/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 279673 = | 0 (0.000) | noncoding (258/768 nt) | IS1 | repeat region | |||||