mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.2% | 99.2 / 28.7 | 69 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 63 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 382211 | NA (NA) | 9 (0.160) | 8/272 | 6.1 | NA | noncoding (952/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382218 | NA (NA) | noncoding (959/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3423376 = | 63 (1.080) | 7 (0.120) | 6/278 | 7.2 | 10.1% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 3423665 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 7 (0.130) | 5/264 | 7.4 | NA | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274663 = | NA (NA) | noncoding (487/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 191713 = | 66 (1.130) | 5 (0.090) | 5/268 | 7.5 | 7.4% | intergenic (+5/‑142) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase |
| ? | NC_000913 | 191747 = | 63 (1.130) | intergenic (+39/‑108) | tsf/pyrH | translation elongation factor EF‑Ts/uridylate kinase | |||||
| * | ? | NC_000913 | = 3911815 | 136 (2.330) | 7 (0.130) | 5/270 | 7.6 | 5.3% | intergenic (‑290/+24) | pstS/glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase |
| ? | NC_000913 | = 3911825 | 122 (2.180) | intergenic (‑300/+14) | pstS/glmS | phosphate ABC transporter periplasmic binding protein/L‑glutamine:D‑fructose‑6‑phosphate aminotransferase | |||||
| * | ? | NC_000913 | 3892358 = | 110 (1.880) | 5 (0.090) | 5/270 | 7.6 | 4.6% | coding (744/1176 nt) | mdtL | multidrug efflux system protein |
| ? | NC_000913 | 3892392 = | 102 (1.820) | coding (778/1176 nt) | mdtL | multidrug efflux system protein | |||||
| * | ? | NC_000913 | 3679527 = | 45 (0.770) | 5 (0.090) | 5/274 | 7.7 | 10.1% | coding (109/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase |
| ? | NC_000913 | 3679545 = | 45 (0.790) | coding (127/930 nt) | kdgK | 2‑dehydro‑3‑deoxygluconokinase | |||||
| * | ? | NC_000913 | 2455052 = | 48 (0.820) | 4 (0.070) | 4/264 | 8.0 | 9.0% | intergenic (‑51/+31) | yfcU/yfcV | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein/putative fimbrial‑like adhesin protein |
| ? | NC_000913 | 2455076 = | 36 (0.660) | intergenic (‑75/+7) | yfcU/yfcV | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein/putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913 | 2242875 = | 51 (0.870) | 4 (0.070) | 4/264 | 8.0 | 8.3% | coding (93/1158 nt) | yeiB | DUF418 family putative inner membrane protein |
| ? | NC_000913 | 2242897 = | 41 (0.750) | coding (71/1158 nt) | yeiB | DUF418 family putative inner membrane protein | |||||
| * | ? | NC_000913 | 4235462 = | NA (NA) | 4 (0.070) | 4/268 | 8.1 | 7.1% | noncoding (42/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4235494 = | 52 (0.940) | noncoding (74/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||