Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,526,449 IS5 (+) +4 bp intergenic (‑300/‑17) nudE ← / → yrfF adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)78 (1.030) 62/284 0.1 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 3526449 = 0 (0.000)intergenic (‑300/‑20) nudE/yrfF adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein
* ? NC_000913 = 2290113NA (NA)82 (1.100) 58/282 0.2 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 3526452 0 (0.000)intergenic (‑303/‑17) nudE/yrfF adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein

TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2288778‑2289057
                                                                                                                                             |                                                                                                                                          
ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGGATATaagg                                                                                                                                           >  1:92378/1‑143 (MQ=255)
  ttagttGCTGTTCTCCGCCATGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTCTTCCAGGACAACACCATCAACAGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaa                                                                                                                                         <  2:465594/138‑1 (MQ=255)
        gCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCCACAGTTGATGCCAATGCCATGGGTGAATCTACGGAAGGTGCg                                                                                                                                   >  2:430665/1‑143 (MQ=255)
        gCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGACTATAACGAACGTGCg                                                                                                                                   >  2:618570/1‑143 (MQ=255)
           gTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCACCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt                                                                                                                                >  1:684323/1‑143 (MQ=255)
           gTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt                                                                                                                                <  1:498984/143‑1 (MQ=255)
              ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAg                                                                                                                             >  1:1331673/1‑143 (MQ=255)
              ctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAAACAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATGCTCAACTGGTTATGCCCATGCTATGGGTGAATAGAACGGAGGTGCGACTAAg                                                                                                                             >  1:243823/1‑143 (MQ=255)
                 cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  2:477116/143‑1 (MQ=255)
                 cGCCAGGATTGATTTTCGTAGTAGTGGCGGTCCCATGAACCAGCTGGATATCTTTTTCCAACTTGGTGCGAATTCCGATGTCTGCCTAGTCCACATTTTATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  1:1360105/143‑1 (MQ=255)
                 cGCCAGGATTGAGTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                          <  1:645114/143‑1 (MQ=255)
                  gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACAGCATCAACTGTCTCACCATACTCAACAGTTGCTGCCAATGCTATGGGTGAATATCAGGAAGGTGCGACTAAGCggg                                                                                                                         >  1:542531/1‑143 (MQ=255)
                      ggATTGATTTTCGTATTAGTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCATCTTTCTTACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaaa                                                                                                                     <  2:1027073/143‑1 (MQ=255)
                        attgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGAGAATAAAAGGAAGGTGGGAATAAACGGGGAAAtg                                                                                                                   >  2:78060/1‑142 (MQ=255)
                        attgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGCTGATGCCAATGCTATGGGTGAATACAAGGACGGTGTGAATACGCGGGGAAAta                                                                                                                   >  2:701571/1‑142 (MQ=255)
                         ttgattTTCGTATTATTCGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACTGGTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                                  <  2:496245/143‑1 (MQ=255)
                         gtgattTTCGCTCTACTGGCTGTCCCATAACCCATCTGTATCTCTTTTTCCCGGACAACTCCATCATTTGGTTTACCATACGCGACAGTTGATGCCAATGCTATGGTTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttc                                                                                                                  <  2:1184002/142‑1 (MQ=255)
                           gattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                                <  2:574372/143‑1 (MQ=255)
                            attTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                                                               >  1:1237088/1‑143 (MQ=255)
                              tttCGTAGTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCGTGACAAGACCATCAACTGTCTTACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttcttcgc                                                                                                             <  2:230682/143‑3 (MQ=255)
                                               tCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCCTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                            <  1:232737/143‑1 (MQ=255)
                                               tCCCATAAACCAACTGGATATCTTTTTCCAGGACAACGCCATCCGGTGGCTCACCATACTCCAAAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                            <  1:571691/143‑1 (MQ=37)
                                                 ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca                                                                                          >  1:547638/1‑143 (MQ=255)
                                                 ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAGTCTTCTCCGCTGACTCAGtcatttca                                                                                          >  2:1008057/1‑143 (MQ=255)
                                                  cATAAACCAGCTGGATCTCTTTCTCCAGGACAACACCATTAACTGTCTCACAACACTCCACAGCTGATGCCAATGCTATGTGTGAATATAAGGAAGGTGCGTATAAGCGGGTAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                         <  2:24926/143‑1 (MQ=25)
                                                  cATAAACCAGCTGGATATCTTTTTCCAGGACGACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGACTAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatctcct                                                                                         >  1:1319741/1‑141 (MQ=255)
                                                  cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACCCAGtcatttcat                                                                                         >  2:1344406/1‑143 (MQ=255)
                                                             tgtatatCTTTTTCCGGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAGTGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt                                                                              <  2:1294808/140‑1 (MQ=255)
                                                               gATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAGTCTTCTCGGCTGACACAGTCATTTCATTTATTCATGtttt                                                                            >  2:538803/1‑142 (MQ=255)
                                                                atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                           <  1:924998/143‑1 (MQ=255)
                                                                atagCTTTGTCCAGGACACCACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                           <  1:429617/143‑1 (MQ=255)
                                                                   tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATAGGTGAATATAAGGACGGTGCGAATAAGCGGGGAAACTCTTCTCGGATGACTCAGTCATTTCCTTTCTTCCTGTTTGAAcc                                                                        >  2:1028769/1‑143 (MQ=37)
                                                                    cTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTGACCCg                                                                       >  2:1107355/1‑143 (MQ=255)
                                                                     tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGa                                                                      >  1:1330448/1‑143 (MQ=255)
                                                                        ttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                                                                   >  2:54261/1‑143 (MQ=255)
                                                                           cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                                                                <  1:605070/143‑1 (MQ=255)
                                                                           cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAATTCGTCATGTTTTAGCTGAtttttt                                                                >  2:468114/1‑143 (MQ=255)
                                                                             ggACGACACCATCGACTGTCTCACCATCCTCAACAGTTGATGCCAACGCTATGGGTGACTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                              <  2:1331283/143‑1 (MQ=21)
                                                                                caacaCCCGCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc                                                           <  1:982525/143‑1 (MQ=255)
                                                                                 aacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAGTTTTTCTCCCg                                                          >  2:1245170/1‑143 (MQ=255)
                                                                                  acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCACAGATTCATGTTTGAGCCGATTCTTTCTCCCGt                                                         >  2:808113/1‑143 (MQ=25)
                                                                                    acCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGACTTTTTCTCCCGTaa                                                       >  2:993307/1‑143 (MQ=255)
                                                                                       aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGCGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCGCGGCTGCCTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg                                                    >  1:187093/1‑143 (MQ=255)
                                                                                          aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTACCTTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt                                                 >  1:766946/1‑143 (MQ=255)
                                                                                          aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATAGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTGAGCCGATTTTTTCTCCCGTACATGCCt                                                 >  1:160576/1‑143 (MQ=255)
                                                                                           accgTCTCACCATCCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGTATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                <  2:432807/140‑1 (MQ=255)
                                                                                           aCTCTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCCGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                                <  1:506017/143‑1 (MQ=255)
                                                                                             tGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATACGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                              >  2:768993/1‑143 (MQ=255)
                                                                                               tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt                                            >  1:1295985/1‑143 (MQ=255)
                                                                                               tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATGTTTTCTCCCATAAATGCCTTGAAt                                            >  2:1050950/1‑143 (MQ=255)
                                                                                               tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACCCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAAt                                            >  1:628832/1‑143 (MQ=255)
                                                                                                   gccATGCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTCCGAATAAGCGGGGAAATTCTTCTCGGCTGTCTCAGCCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                        <  2:1054562/142‑1 (MQ=255)
                                                                                                    ccATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGcc                                       >  1:1044473/1‑143 (MQ=255)
                                                                                                      aTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTGGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCCTAGATGTCGTGTATcgggcgc                                     >  2:794627/1‑137 (MQ=18)
                                                                                                          tCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTGAATGCCTTGAATCAGCCTCtttc                                 >  1:1201089/1‑142 (MQ=255)
                                                                                                            aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTCAATGCCTTGACTCAGCCTAtttcgc                               >  2:753605/1‑140 (MQ=255)
                                                                                                            aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                               <  1:794811/143‑1 (MQ=255)
                                                                                                            aaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCAGATTGTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                               >  1:433945/1‑143 (MQ=255)
                                                                                                                   ggtGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttc                        <  2:356570/141‑1 (MQ=255)
                                                                                                                    aTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTTCCGTAATTGCCTCAAATCACCCTATTTCGACCGTtcct                       >  1:922746/1‑143 (MQ=17)
                                                                                                                    aTGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct                       >  1:422832/1‑143 (MQ=255)
                                                                                                                        ctctGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                   <  1:1131165/140‑1 (MQ=255)
                                                                                                                        cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc                   <  1:1003315/143‑1 (MQ=255)
                                                                                                                           tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTGCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt                <  1:1116144/143‑1 (MQ=255)
                                                                                                                             cTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAttt              <  2:1237088/143‑1 (MQ=40)
                                                                                                                              tATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTa             <  1:913083/143‑1 (MQ=39)
                                                                                                                                tGGGTGATTATAAGGAATGTGCGAATAAGCGGGGATATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGTCCGTTTCTTCGCCATTTAAg           <  2:313895/143‑1 (MQ=11)
                                                                                                                                 gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg          >  2:939550/1‑143 (MQ=37)
                                                                                                                                  ggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGCCCGTTTCTTCGCCATTTAAGGc         >  2:253042/1‑143 (MQ=25)
                                                                                                                                   gagAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACGCAGTCATTACATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCGATTTAGACCGTTTCTTCAACACTTAAGACg        >  2:465145/3‑143 (MQ=11)
                                                                                                                                    tGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATAAGCCTATTTAGAACGTTTCTTCGCCACTCATGGCGt       >  2:209954/1‑143 (MQ=11)
                                                                                                                                     gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAGGTCGtt      >  1:956819/1‑143 (MQ=18)
                                                                                                                                     gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAGGGCGtt      >  2:774867/1‑143 (MQ=18)
                                                                                                                                         ataAGGAAGGTGCGAATAAGCGGGGAAATACGGCTCGGCGGACTCTGTCGTTTCATTTGTTCAGGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTGGCCATTTAAGGCGTTGTcc  >  1:1007038/1‑143 (MQ=11)
                                                                                                                                             |                                                                                                                                          
TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC  >  NC_000913/2288778‑2289057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.