Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,876,678 IS5 (+) +4 bp coding (98‑101/1038 nt) iap → aminopeptidase in alkaline phosphatase isozyme conversion

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)32 (0.860) 31/284 0.2 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 2876678 = 0 (0.000)coding (98/1038 nt) iap aminopeptidase in alkaline phosphatase isozyme conversion
* ? NC_000913 = 2290113NA (NA)29 (0.780) 28/284 0.3 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 = 2876681 0 (0.000)coding (101/1038 nt) iap aminopeptidase in alkaline phosphatase isozyme conversion

TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2288778‑2289056
                                                                                                                                             |                                                                                                                                         
ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagg                                                                                                                                          >  2:178778/1‑143 (MQ=255)
    atatGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGATGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaaggaagg                                                                                                                                      <  2:344139/143‑1 (MQ=255)
             tctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCCCCATCCTCAACAGTTGATGCAAATGCTATGGGTGAATATAAGGAAGGTGCGAATaa                                                                                                                             >  1:236907/1‑143 (MQ=255)
                 cGCCAGGAGTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGCGAATATAAGGAAGGTGCGAATAAGCgg                                                                                                                         >  2:15296/1‑143 (MQ=255)
                  gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCggg                                                                                                                        >  1:636282/1‑143 (MQ=255)
                       gattgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAt                                                                                                                   >  1:137997/1‑143 (MQ=255)
                       gattgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAAAACCATCAACTGTCTCACCATACTCCACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAt                                                                                                                   >  1:270684/1‑143 (MQ=255)
                        cttgattATCGTATTATTGGCGGTCCCATCAACCAGCTGGATCTCTTTTTCCAGGACACCCCCCTCTACTGTCTCACCATCCCCACCCGATGATGCCCATGCTCTGAGTACCTATAAGGCAGGTGAGAATCAGAGTGTAAAtg                                                                                                                  >  2:139595/2‑142 (MQ=255)
                           gattTTCGTATTATTGGCAGTCCCATAAACCAGCTGGATATCTTTTTCCAAGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                               <  1:215854/143‑1 (MQ=255)
                            attTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAttcttc                                                                                                              >  1:367743/1‑143 (MQ=255)
                                tCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                          <  1:463564/143‑1 (MQ=255)
                                   tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                                                                       >  1:534502/1‑143 (MQ=255)
                                       attGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGACTGACTc                                                                                                   >  2:83275/1‑143 (MQ=255)
                                              gTCCCATCAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt                                                                                            <  2:351880/143‑1 (MQ=255)
                                                  cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat                                                                                        >  1:197613/1‑143 (MQ=255)
                                                       aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                   <  2:151625/143‑1 (MQ=255)
                                                           gCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGCGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATg                                                                               >  2:154417/1‑143 (MQ=255)
                                                                agatCTGTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                          <  1:673973/141‑1 (MQ=255)
                                                                  atCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGACTCTAAGGAAGGTGCGAATAAGTGCGGAAATTCTTCTCGGCTGACTACGTAATTTCATTTCTTCATGTTTGAGc                                                                        >  2:619430/1‑143 (MQ=25)
                                                                   tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTGCTCGGCTGACTCAGTCATTTCAGTTCTTCGCGTTGGAGcc                                                                       >  1:225880/1‑143 (MQ=37)
                                                                    cTTTTTCCAGGACAACACCATCAACTGTCTCACCCTACTCAGCGGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTGTCGGCTGACTCAGTCATTTCATTGGTGCATGTTTGacgcg                                                                      >  2:468431/1‑139 (MQ=25)
                                                                      ttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGATATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTAGGCAGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt                                                                    >  2:651434/1‑143 (MQ=255)
                                                                             ggACACCACCATCAACTGTCTCACCATCCTCAACTGTTGATGCCACTGCTATGGGTGAATATAAGGAAGGTGCGAATATGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                             <  2:66083/143‑1 (MQ=21)
                                                                                 aacaCCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTAGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGCTTTTTTCTCCCg                                                         >  2:66757/1‑143 (MQ=255)
                                                                                      cATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAACATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt                                                    >  2:123673/1‑143 (MQ=255)
                                                                                       aTCAACTGTCTCACCATACTCAACAGTTGATGCCACTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGGTTGGGGCGGTATTTGCTCCCGTAAATg                                                   >  1:50574/1‑143 (MQ=21)
                                                                                       aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATg                                                   >  1:97563/1‑143 (MQ=255)
                                                                                               tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCCCGTAAATGCCTTGAAt                                           >  2:355278/1‑143 (MQ=255)
                                                                                                 tcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa                                         >  1:351390/1‑143 (MQ=255)
                                                                                                  cACCATACTCATCAGTTGATGCCAAGGCCATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                        <  1:171462/143‑1 (MQ=255)
                                                                                                   aCCATACTCAACAGTTGATGCCAATGCTATGGGTGCACATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc                                       >  2:34926/1‑143 (MQ=255)
                                                                                                    ccATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGACTTGAATCAGcc                                      >  2:58020/1‑143 (MQ=255)
                                                                                                        aCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAtt                                  <  1:501464/143‑1 (MQ=255)
                                                                                                         cgcAACAGTTGATGCCAAGGCTATGGGTGAAGAGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt                                 <  1:619430/141‑1 (MQ=255)
                                                                                                            aaCAGTTGATGCCAATGCTATGGGTGAATATACGGAAGGTGCGAATAAGCGGGGAACTTCTTCTCGGATGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAACTCCATTGCAGAAGCCTCCTTAGa                              >  2:177603/1‑143 (MQ=17)
                                                                                                                gctGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt                          <  1:494720/141‑1 (MQ=255)
                                                                                                                gTTGATACCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTATTCATGTTTGAGCAGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt                          <  1:254571/143‑1 (MQ=255)
                                                                                                                       tcAATGCTATGGGTGAATATAATGAAGGTGTGGTTTCGCGTAAAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                   <  2:137997/142‑1 (MQ=14)
                                                                                                                       ccAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTCAGTACTTTCATTTCTTCATGTTTGAGCCGAGTTTTTCTCCCGTCTTCGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                   <  2:270684/143‑1 (MQ=14)
                                                                                                                       ccAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCg                   <  1:406686/143‑1 (MQ=255)
                                                                                                                        cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCATTGAATCAGCCAATTTAGACCGTTTCTACga                  >  2:83912/1‑142 (MQ=255)
                                                                                                                         aaTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc                 <  1:296325/143‑1 (MQ=255)
                                                                                                                         aaTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCGATTTAGACCGCTTCTGCGcc                 >  2:152427/1‑143 (MQ=255)
                                                                                                                                   gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAGTCAGCCTATTTATGCCGTTTCTTCGCCCTTTAAGGCg       >  1:420367/1‑143 (MQ=255)
                                                                                                                                   gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATGCGCCTATTTAGACCGATTCTTCGCCATTTAAGGCg       >  1:272699/1‑143 (MQ=255)
                                                                                                                                   gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg       >  1:481300/1‑143 (MQ=35)
                                                                                                                                   gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTAATAACGTGCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg       <  1:668063/143‑1 (MQ=11)
                                                                                                                                       atatAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTGTCCCGTAACTGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCCTTAAGGCGTTAt   >  2:330378/1‑143 (MQ=255)
                                                                                                                                        tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTTTGCCGCAAATTCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc  >  1:491000/1‑143 (MQ=9)
                                                                                                                                        tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCGTTTAAGGCGTTATc  >  1:590336/1‑143 (MQ=14)
                                                                                                                                             |                                                                                                                                         
TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATC  >  NC_000913/2288778‑2289056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.