| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 282061 = | 51 (0.970) | 4 (0.080) | 3/262 | 7.7 | 7.3% | intergenic (‑78/‑217) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| ? | NC_000913 | 282118 = | 54 (1.110) | intergenic (‑135/‑160) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTATGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/282211‑282061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctttggggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAACAAAAT > NC_000913/282118‑282258 cgagGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATGGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCC < 2:450888/139‑1CTATGGCGCACAACAAGGAGAGGTAAATCGGCAGGGACGAGGGAGTGCGGGAAATTTAAGCTGGATCACATCTTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCC < 2:450854/143‑1 ATGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCT < 1:800532/143‑1 gcggAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTG < 1:608562/139‑1 CGCAGAACAAGGAGAGTTAAATCGGAAGAGAAGAGGGAGGGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGG < 1:432986/143‑1 GCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGG < 1:927485/143‑1 GCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCCTTGGG > 1:635731/1‑143 GCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAAGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGG > 1:1757/1‑143 GCAGAACAAGGACAGGTAAACCGGAAGGGAAGAGGGAGTGAAGCAAATATTATCTCGATCACCAATTACCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGG < 1:400440/143‑1 CCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCC > 2:877444/1‑102 CCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCC < 1:877444/102‑1 cccggCCCTCTCCCCAAAGGGGCGAGGGGCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCCTCATAGTATGATCGTTAAATAAACGAACGCTGa > 1:785232/6‑142 CCCTCTCCCCAAAGGGGCGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTAT > 1:388434/1‑143 CCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAG < 1:803638/143‑1 CTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCCTAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAc > 2:805460/1‑142 CTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGAGCCAGCTTAAATTTCCCGCCCTGCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAA < 2:477806/143‑1 aaaGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCCTAGTATGATCGTTAAATAAACGAACGCTGCTCTATAATGTAGAAC > 2:23879/4‑143 aaaGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGGTAAATACACGAACGCTGTTCTATAAGGTAGAAC > 2:775469/4‑143 GGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTCGAACAAA > 2:484004/1‑143 GGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGACCGCTGTTCTATAAGGTAGAACAAAAT > 2:190257/1‑143 CTATGACGCAGAACAAGGAGAGGTAAATCGGAAGGGAAGAGGGAGTGCGGGAAATTTAAGCTGGATCACATATTGCCCCTCACCCCGGCCCTCTCCCCAAAGGGGCGAGGGGGAAAAGATGGCTCGGTGCAGTCCCCTCTCCCCTTTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/282211‑282061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccctttggggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAACAAAAT > NC_000913/282118‑282258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |