New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 282061 = | 51 (0.970) | 4 (0.080) | 3/262 | 7.7 | 7.3% | intergenic (‑78/‑217) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
? | NC_000913 | 282118 = | 54 (1.110) | intergenic (‑135/‑160) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
CTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAACAAAAT > NC_000913/281978‑282258 | cTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCACCTTTGGGgaga > 2:803638/1‑143 (MQ=255) cctcaaCGGGTTCGGCTGCCTTAGTTGTAAGTGTCTACCATGGCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAggg < 1:340621/139‑1 (MQ=255) aCGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCggg < 2:99303/143‑1 (MQ=255) ttCTTATGCCTTAGTTGTAAGGGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAg < 2:58188/143‑1 (MQ=255) tCTTATGCCTTAGTTGTAAGTGGCTACCATGGCCCCGAACAAGTGTTCACTATGTCCCCGGACCATACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCTGGGGTGAgg < 2:374244/143‑1 (MQ=255) tCTTATGCCTTAGTTGTAAGTGACTACCATGCCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAgg < 1:262775/143‑1 (MQ=255) cTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAggg > 1:571408/1‑143 (MQ=255) ttAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCAGGAACGTACACCCCCAAGGGCAGAGGGGACTGCCCCGAGCCATCTTTTCCCCCCCGCCCGTTCGGGGAGAGGGCCGGGGGGCGGGGCactgtg > 2:830497/1‑138 (MQ=255) tAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATAtgt > 1:272019/1‑143 (MQ=255) ttGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCCAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCGCGCCCCGTCGGGGGCAGGCCCGGCGGGACGGGCGatacgcgct > 2:813145/1‑137 (MQ=255) gTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGCGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGAGCCGGGGTGAGGGGCAATATGTGATcc > 1:232493/1‑143 (MQ=255) aaGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAg > 1:530530/1‑143 (MQ=255) tCTACCATGTCCCCGATCAAGTTTTAACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTaa < 1:527287/143‑1 (MQ=255) tACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGTATGCACTTCATCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAAt < 1:947883/143‑1 (MQ=255) cATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGAGCCAGCTTAAATTTc > 1:271473/1‑143 (MQ=255) tGTCCCCGAACAAGTGTTCACTATGCCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTccc < 1:675465/143‑1 (MQ=255) ccccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGGGGGGACTGCACCGAGCCATCTTTTCGCCCTCGACCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCGGCTTAAATTTGCCGCa > 1:683757/1‑143 (MQ=255) ccccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCa < 1:23227/143‑1 (MQ=255) cccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCAc > 2:933355/1‑143 (MQ=255) cccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCAc > 1:605302/1‑143 (MQ=255) ccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGAGCCGAGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACt > 1:805842/1‑143 (MQ=255) aaCAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCAACTTTTCCCACTCGCCCCTTTGGGGAGAGGACCGGGGTGAGGGGCCATATGTGGTCCAGCTTAAATTTCCCGCACTccc > 1:20613/1‑143 (MQ=255) aGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTctt < 1:479120/143‑1 (MQ=255) gtgtTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGGGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttc > 2:599264/1‑143 (MQ=255) gtggTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttc < 1:82124/143‑1 (MQ=255) tATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGTCATCTTTTCCCCCTCGCTCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGa < 1:127645/143‑1 (MQ=255) tCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTa < 1:791799/143‑1 (MQ=255) ccGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTAccg > 1:363076/1‑142 (MQ=255) cGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAGATCTCCGGCACTCCCGCTTCCCCTCCGCTTTACctc > 1:82757/1‑143 (MQ=255) cGGACCGAACCCCCCAAAGGGGAGAGCGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGTAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACctc < 1:763726/143‑1 (MQ=255) aCCGTACACCCCAAAGGGGAGCGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTACATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTcc < 2:435771/143‑1 (MQ=255) tACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGAGTTACCTCTCCTTGt > 1:421438/1‑143 (MQ=255) cacCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTc < 1:65246/143‑1 (MQ=255) cccAAGGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGc < 1:635731/143‑1 (MQ=255) cccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCTTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGc < 1:1757/143‑1 (MQ=255) cccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGTAATTGGTGATCGAGATAATATTTGCTTCACTCCCTCTTCCCTTCCGGTTTACCTGTCCTTGTTCTGc > 1:400440/1‑143 (MQ=255) cccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGc > 1:927485/1‑143 (MQ=255) ccAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCCCTCCCTCTTCTCTTCCGATTTAACTCTCCTTGTTCTGCg > 1:432986/1‑143 (MQ=255) cAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTCCgc > 1:608562/1‑142 (MQ=255) aGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCAt > 1:800532/1‑143 (MQ=255) gggAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCCATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTcctcg > 2:450888/1‑139 (MQ=255) gggAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAAGATGTGATCCAGCTTAAATTTCCCGCACTCCCTCGTCCCTGCCGATTTACCTCTCCTTGTTGTGCGCCATAg > 2:450854/1‑143 (MQ=255) ggggACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGAt < 2:272019/143‑1 (MQ=255) gggACTGCACCGGTCCATCTTTTCTCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCCCTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATc < 2:47984/143‑1 (MQ=255) acggCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGTGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGCTCTTCGTCATAGTATGATCGtt < 2:342326/140‑1 (MQ=255) cTGCACCGAGCCATCTTGTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTta < 1:847069/143‑1 (MQ=255) tGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCCCTCCTTGTTCTGCGTCAGAGTATGATCGTtaa > 1:640787/1‑143 (MQ=255) tCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCCCTCCCTCTTCCCTCCCGATTTACCTCTCCTTGTTTTGCGTCCTACCTTGATCCTTCAATAAACGAACGc > 1:187457/1‑143 (MQ=255) ttCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGtt > 2:195056/1‑143 (MQ=255) cccTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCTAGCTTATATTTTCCGCACTCCCTCTTCCCTTCCGATTTACCGCGCCGTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCtat < 1:85539/143‑1 (MQ=255) ccTCGCCGCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCtata < 2:807763/143‑1 (MQ=255) ccTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATCGTATGAACGTTAAATCAACGAACGCTGCTCtata > 2:705786/1‑143 (MQ=255) cTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGGTTTCCCCCCCCGCGCTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATaa > 1:439242/1‑143 (MQ=255) gCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCCTAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGt > 1:789205/1‑143 (MQ=255) cccTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAg < 1:803638/143‑1 (MQ=255) cTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCCTAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGac > 2:805460/1‑142 (MQ=255) cTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGAGCCAGCTTAAATTTCCCGCCCTGCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGaa < 2:477806/143‑1 (MQ=255) aaaggggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCCTAGTATGATCGTTAAATAAACGAACGCTGCTCTATAATGTAGAAc > 2:23879/4‑143 (MQ=255) aaaggggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGGTAAATACACGAACGCTGTTCTATAAGGTAGAAc > 2:775469/4‑143 (MQ=255) ggggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTCGAACaaa > 2:484004/1‑143 (MQ=255) ggAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGACCGCTGTTCTATAAGGTAGAACAAAAt > 2:190257/1‑143 (MQ=255) | CTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTCTGCGTCATAGTATGATCGTTAAATAAACGAACGCTGTTCTATAATGTAGAACAAAAT > NC_000913/281978‑282258 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |