| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 282061 = | 51 (0.970) | 4 (0.080) | 3/262 | 7.7 | 7.3% | intergenic (‑78/‑217) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| ? | NC_000913 | 282118 = | 54 (1.110) | intergenic (‑135/‑160) | yagA/yagE | CP4‑6 prophage; putative DNA‑binding transcriptional regulator/2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTC > NC_000913/281924‑282201 | aacaaacTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCGTAAACGGGGTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAGCGAGTGTTCACTATGTCCCCGGACCGTACAGCCCaa > 2:28835/1‑143 (MQ=255) acacTCAGTACGTAATGCCATGGTATCCCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAgg < 2:187699/141‑1 (MQ=255) aaacTCAGTACGGAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAgg < 2:749337/143‑1 (MQ=255) cgcAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGga < 2:132058/141‑1 (MQ=255) tCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAACCGGGCTCTTACGCCGTCGTCGTAAGTGTCTACCATGTCCCCCAACAAACGCTCACTAAGTCCCCACCCCCCACACCCCaaacagaca > 2:293193/1‑137 (MQ=255) aGTACGGAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGagag < 2:533851/143‑1 (MQ=255) ggaCGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAgg < 2:509068/141‑1 (MQ=255) tACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAggg < 1:155278/143‑1 (MQ=255) cGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTCCACCCCAAAGGGGAGCGGGGa > 1:551285/1‑143 (MQ=255) gACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAACCGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACCCCCCAAAGGGGAGAGGGGACTGCAc > 1:291706/1‑143 (MQ=255) aTGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGCGAGGGGACTGCACCGa > 1:857970/1‑143 (MQ=255) ggTATCTCGCGCGGCCCAGGGCGTGAGCGACTCCATAATCGGGTTCTTATGCCTTAGTTGTAAGTGTCGACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGc < 1:460776/143‑1 (MQ=255) gTATCTCTCGCATCCCAGGGCATAAGCGAATCCATAAGCGGTTTCTTATGCCTTCGTTGTAAGTGTCTACGATGTCCCCGAACACGTGTTAACGGTGTCCCCGGACCGTACCCCCCAAAGGGGAGAGGGCACTGGACAGAAcc > 2:449649/1‑143 (MQ=255) tctcGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCtt > 2:23227/1‑143 (MQ=255) cAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGCGTCTACCATGTCCCCGAACAAGGGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCCTCTCCTCCCCcgcg > 2:318467/1‑143 (MQ=255) aaGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTg < 2:496306/143‑1 (MQ=255) aGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTgg < 2:253552/143‑1 (MQ=255) aGCGACGTCAGAAGCGGGTTCTTATGCGTTAGTTCCAACTGCCAATCACGCCGCCTTACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTgg < 2:876625/143‑1 (MQ=255) cTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCACCTTTGGGgaga > 2:803638/1‑143 (MQ=255) cctcaaCGGGTTCGGCTGCCTTAGTTGTAAGTGTCTACCATGGCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAggg < 1:340621/139‑1 (MQ=255) aCGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCggg < 2:99303/143‑1 (MQ=255) ttCTTATGCCTTAGTTGTAAGGGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAg < 2:58188/143‑1 (MQ=255) tCTTATGCCTTAGTTGTAAGTGGCTACCATGGCCCCGAACAAGTGTTCACTATGTCCCCGGACCATACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCTGGGGTGAgg < 2:374244/143‑1 (MQ=255) tCTTATGCCTTAGTTGTAAGTGACTACCATGCCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAgg < 1:262775/143‑1 (MQ=255) cTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAggg > 1:571408/1‑143 (MQ=255) ttAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCAGGAACGTACACCCCCAAGGGCAGAGGGGACTGCCCCGAGCCATCTTTTCCCCCCCGCCCGTTCGGGGAGAGGGCCGGGGGGCGGGGCactgtg > 2:830497/1‑138 (MQ=255) tAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATAtgt > 1:272019/1‑143 (MQ=255) ttGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCCAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCGCGCCCCGTCGGGGGCAGGCCCGGCGGGACGGGCGatacgcgct > 2:813145/1‑137 (MQ=255) gTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGCGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGAGCCGGGGTGAGGGGCAATATGTGATcc > 1:232493/1‑143 (MQ=255) aaGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAg > 1:530530/1‑143 (MQ=255) tCTACCATGTCCCCGATCAAGTTTTAACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTaa < 1:527287/143‑1 (MQ=255) tACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGTATGCACTTCATCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAAt < 1:947883/143‑1 (MQ=255) cATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGAGCCAGCTTAAATTTc > 1:271473/1‑143 (MQ=255) tGTCCCCGAACAAGTGTTCACTATGCCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTccc < 1:675465/143‑1 (MQ=255) ccccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGGGGGGACTGCACCGAGCCATCTTTTCGCCCTCGACCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCGGCTTAAATTTGCCGCa > 1:683757/1‑143 (MQ=255) ccccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCa < 1:23227/143‑1 (MQ=255) cccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCAc > 1:605302/1‑143 (MQ=255) cccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCAc > 2:933355/1‑143 (MQ=255) ccGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGAGCCGAGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACt > 1:805842/1‑143 (MQ=255) aaCAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCAACTTTTCCCACTCGCCCCTTTGGGGAGAGGACCGGGGTGAGGGGCCATATGTGGTCCAGCTTAAATTTCCCGCACTccc > 1:20613/1‑143 (MQ=255) aGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTctt < 1:479120/143‑1 (MQ=255) gtgtTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGGGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttc > 2:599264/1‑143 (MQ=255) gtggTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTcttc < 1:82124/143‑1 (MQ=255) tATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGTCATCTTTTCCCCCTCGCTCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGa < 1:127645/143‑1 (MQ=255) tCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTa < 1:791799/143‑1 (MQ=255) ccGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTAccg > 1:363076/1‑142 (MQ=255) cGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAGATCTCCGGCACTCCCGCTTCCCCTCCGCTTTACctc > 1:82757/1‑143 (MQ=255) cGGACCGAACCCCCCAAAGGGGAGAGCGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGTAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACctc < 1:763726/143‑1 (MQ=255) aCCGTACACCCCAAAGGGGAGCGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTACATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTcc < 2:435771/143‑1 (MQ=255) tACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGAGTTACCTCTCCTTGt > 1:421438/1‑143 (MQ=255) cacCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTc < 1:65246/143‑1 (MQ=255) | AACAAACTCAGTACGTAATGACATGGTATCTCTCGCATCCCAGGGCATAAGCGACTCCATAAACGGGTTCTTATGCCTTAGTTGTAAGTGTCTACCATGTCCCCGAACAAGTGTTCACTATGTCCCCGGACCGTACACCCCAAAGGGGAGAGGGGACTGCACCGAGCCATCTTTTCCCCCTCGCCCCTTTGGGGAGAGGGCCGGGGTGAGGGGCAATATGTGATCCAGCTTAAATTTCCCGCACTCCCTCTTCCCTTCCGATTTACCTCTCCTTGTTC > NC_000913/281924‑282201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |