mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3886862 | 235 (1.440) | 6 (0.040) | 6/506 | NT | 2.5% | coding (36/1365 nt) | mnmE | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
| ? | NC_000913 | = 3886871 | 242 (1.520) | coding (45/1365 nt) | mnmE | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase | |||||
| * | ? | NC_000913 | = 3846153 | 254 (1.560) | 3 (0.020) | 3/508 | NT | 1.2% | coding (1014/1392 nt) | uhpT | hexose phosphate transporter |
| ? | NC_000913 | = 3846161 | 257 (1.610) | coding (1006/1392 nt) | uhpT | hexose phosphate transporter | |||||
| * | ? | NC_000913 | 3233221 = | 127 (0.780) | 3 (0.020) | 3/500 | NT | 2.4% | coding (1559/2019 nt) | fadH | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| ? | NC_000913 | 3233291 = | 126 (0.800) | coding (1629/2019 nt) | fadH | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked | |||||
| * | ? | NC_000913 | 2562179 = | 115 (0.710) | 3 (0.020) | 3/496 | NT | 2.5% | coding (71/417 nt) | yffO | CPZ‑55 prophage, uncharacterized protein |
| ? | NC_000913 | 2562377 = | 127 (0.810) | coding (269/417 nt) | yffO | CPZ‑55 prophage, uncharacterized protein | |||||
| * | ? | NC_000913 | 1960122 = | 163 (1.000) | 3 (0.020) | 3/504 | NT | 1.9% | coding (61/1734 nt) | argS | arginyl‑tRNA synthetase |
| ? | NC_000913 | 1960144 = | 154 (0.970) | coding (83/1734 nt) | argS | arginyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 1869162 | 166 (1.020) | 4 (0.030) | 4/506 | NT | 2.4% | coding (208/1284 nt) | yeaH | UPF0229 family protein |
| ? | NC_000913 | = 1869167 | 163 (1.020) | coding (213/1284 nt) | yeaH | UPF0229 family protein | |||||
| * | ? | NC_000913 | = 1155574 | 166 (1.020) | 4 (0.030) | 4/504 | NT | 2.4% | coding (451/642 nt) | tmk | thymidylate kinase |
| ? | NC_000913 | = 1155576 | 163 (1.030) | coding (453/642 nt) | tmk | thymidylate kinase | |||||
| * | ? | NC_000913 | = 909601 | 156 (0.960) | 3 (0.020) | 3/514 | NT | 1.8% | coding (1449/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding |
| ? | NC_000913 | = 909648 | 168 (1.040) | coding (1402/1719 nt) | poxB | pyruvate dehydrogenase, thiamine triphosphate‑binding, FAD‑binding | |||||
| * | ? | NC_000913 | 459370 = | 169 (1.040) | 3 (0.020) | 3/496 | NT | 1.6% | coding (483/2355 nt) | lon | DNA‑binding ATP‑dependent protease La |
| ? | NC_000913 | 459634 = | 211 (1.350) | coding (747/2355 nt) | lon | DNA‑binding ATP‑dependent protease La | |||||
| * | ? | NC_000913 | 66606 = | NA (NA) | 3 (0.020) | 3/502 | NT | 2.4% | noncoding (42/248 nt) | REP6 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element, contains 6 REP sequences |
| ? | NC_000913 | 66765 = | 124 (0.790) | noncoding (201/248 nt) | REP6 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element, contains 6 REP sequences | |||||