New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 458799	49 (0.510)	50 (0.530)	44/424	NT	51.0%	intergenic (+99/‑89)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	= 609347	NA (NA)					intergenic (+170/+112)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

ACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/458562‑458799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTC  <  NC_000913/609347‑609112                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ctttcttGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTAACGACGAGTCGGTAAGTGATGGGCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCA                                                                                                                                                                                                                                               <  1:254642/232‑1       ggagtCCATGGTCGATCCGCCGTCCATGGAAGACGTCGAAAAAGTGGTTACCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCG                                                                                                                                                                                                                                         <  2:905021/234‑1          TACAATCTACGATCTGCCGCCCATGGAACACGTCGAAAAAGTGGTTATCGAGGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAAAAGGCATCTGCGGAATAATTAACCATTCCCATACAATTATTTAACCAAAAAAGGGGGACTTTATCTCCCCTTTAATTTTTACTCGATTCTCGCGTTTTAACGTGGGGGAAACATCCCATAAGGGCTA                                                                                                                                                                                                                                      >  1:877645/1‑239              ctttgccgttttCCGTTCATGGAATACTTCGAAAAAGTGGTTATCTACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTTATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAATGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TT                                                                                                                                                                                                                                 <  1:357652/227‑1              attttCGATTTGCCGTCCATGGAAGAAGTCGAAAAAGTGTTTATCGCCGAGTCGGTAATGGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TT                                                                                                                                                                                                                                 <  1:115880/234‑1               TGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTA                                                                                                                                                                                                                                >  2:698964/1‑239                         GCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGAACAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCGGGTGAATAATTAACCATTCCCATCCAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCCTTGAATGTGGGGGCAACTTCCCATAACTGCTAAC‑TTAAGGGTgtaa                                                                                                                                                                                                                       >  1:1014169/1‑234                          CCGTCCATAGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGCAGCGCAACGGGCATCTGGTGCATAATTAACAATTCCCATACCATTAGTTAACCAAAAAGGGGGGATTTTAACTCCCCTTTATTTTTTCCCCTATTTTCAGCGTTGAATGTGTGGGAAAACTCACCAACACGACAAC‑TAAAGGGTTGAAaa                                                                                                                                                                                                                     >  1:383940/1‑237                                         GTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCAT                                                                                                                                                                                                                                              >  2:416516/1‑200                                         GTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCAT                                                                                                                                                                                                                                              <  1:416516/200‑1                                         GTCGAAAAAGGTGTTAGCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCCAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGA                                                                                                                                                                                                      <  2:615354/239‑1                                                     GTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGCTTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGgt                                                                                                                                                                                            >  2:225576/1‑235                                                                gtgggtatgTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGGCGGAAGCGAAACAGGCAACTGGTGAATAATTAACCATTCCCATGCAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCTTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGAC                                                                                                                                                                                <  1:117431/229‑1                                                                      atttgatgtcaAAAGCAAACCGTTGCTTATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC                                                                                                                                                                          <  1:1190556/227‑1                                                                        TTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCG                                                                                                                                                                       <  2:1014169/239‑1                                                                           ATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGGGAGCCCTCGGTGCCTCTTTAAaaggagaacccgcgt                                                                                                                                                                    >  1:553490/1‑224                                                                             GGTCAAAGCAACCCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCTTTGAATGTGGGGGAAACATCCCTAAAGC‑CTCACATTAAGGGTTGAACCATCGGAAAATTTGCAAGCCTCGGGGCCCAGTTAAGAAGAGCCCCCGCGT                                                                                                                                                                    >  1:892933/1‑237                                                                                        ACCGTTGCTGATTTATGGCAATCCGGAAGAGCAACAGGAATGTGGTGAATAATTAACAATTCCCATACAATTAGGTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGAGGGAAACAGCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAAGTGGACGCCTCGAGGCCTCGTTAAGACGCAGCCTCGAGTATTTCAAATGCGT                                                                                                                                                       >  1:807011/1‑239                                                                                                  ATTTTTGGCAAGCCGGAAGCGGAACAGGCATCTGGGTAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCGCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCT                                                                                                                                             <  1:52142/239‑1                                                                                                   tttcatGCAAGGCGGAAGCGGAAAAGGCATCTGGGTGATAATTTACCAGTCCCATACAATTAGTTATCCAAAAAGGGGGGATTTTACCGCCCGTTTAATTTGTCCTCTATTCGCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGGCTCGCGTTCGTCAATTGCGTTTTGTCGGCT                                                                                                                                             <  1:885026/232‑1                                                                                                      ATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCA                                                                                                                                         <  2:807011/239‑1                                                                                                            AGCCGGAAGCGCAACATGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATGTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCG                                                                                                                                                                                                                                         <  1:422163/138‑1                                                                                                            AGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCG                                                                                                                                                                                                                                         >  2:422163/1‑138                                                                                                                                 CTGGTGAATAATTAACCATGCCCCTACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCT                                                                                                             <  2:877645/239‑1                                                                                                                                      ttatttTTAACCATTTCCATTCTATTAGTTAACCAAAAAGGGGGGATTTTATCACCCCTTTAATTTTTCCTTCAGTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAG                                                                                                        <  1:298582/233‑1                                                                                                                                         tcATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTCAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATCCCTCGCGTTATTCAATTGCGTTTTGTTGGCTTTCAGGGAAAC‑TGTCCCACAAATGGCCAACTGTAAACTa                                                                                                     >  1:707898/3‑238                                                                                                                                              tACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGAT                                                                                                <  2:173820/238‑1                                                                                                                                               ACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATG                                                                                               >  2:199292/1‑239                                                                                                                                                  ATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACC                                                                                            <  2:6683/239‑1                                                                                                                                                   TTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATACGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGACTGCGAAGCCTAGGTGCCTCGATAAGACGATGCCTCGCGTTCTTCAATTGCGTCTTGTAGGATGTCAGGGATAC‑TGTCCACCGAACGGCCACATCTAAGCctcagtgacaca                                                                                           >  1:1115691/1‑227                                                                                                                                                    TCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACG‑ATGGCCACCTGTAAGCTCCAGATGACCATT                                                                                         >  2:1218145/1‑239                                                                                                                                                      CCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGATGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCATGGATAC‑TGACCCCCGAATGGCCACCTGTAAGCTCCAGATGCCCATTT                                                                                        >  2:819263/1‑239                                                                                                                                                         TACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCCCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGCTAC‑TGTCCCCCGAAAGGCCACCTGTAAGCTCCAAATGACCAATTTTG                                                                                     >  1:6683/1‑239                                                                                                                                                          ACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCACCAGATGAACATTTTTGT                                                                                    >  1:627666/1‑239                                                                                                                                                            AATTAGTTAACCAAAAAGGGGGGATGTTATGCCCCCTTTAATTTTTCCTCTATTCCCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTA                                                                                  <  2:245762/239‑1                                                                                                                                                              TTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTAT                                                                                 >  2:451379/1‑238                                                                                                                                                              TTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTCTTGTAGCCTGTACGGGATACTTGTCCC‑CGAATGGCCACCCGTAGGCTCacaattccattttcttttat                                                                                 >  1:264600/1‑218                                                                                                                                                               tatTTAACCAAAAAGGGGGGATTTTACTTCCCCTTGAAGTTTTCCCCTAGTCCCGGCGTTGAATGTGGGGGAAACAGCCCATAAGCGCTGAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCAGTTTTGTTATTC                                                                               <  1:1175761/236‑1                                                                                                                                                                      CCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTACC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCCCGTTAAGACGATCCCTCGCGTTCTTCAATTCCGTTTCGTAGGCTGTCAGGGATCC‑TGTCCCACGAATGGCCCCCTGTAAGCTCCAGATGACAATTTTTGTAATTCACCCCAA                                                                        >  1:245762/1‑239                                                                                                                                                                            AGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG                                                                                                                                                                                              >  2:951987/1‑116                                                                                                                                                                            AGGGGGGATTTTATCTCCACTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGTGTTGAACCATCTGAAGAATGCGACGCCTCGG                                                                                                                                                                                              <  1:951987/116‑1                                                                                                                                                                                GGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACACGTTAGTT                                                              >  2:692351/1‑239                                                                                                                                                                                     TTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCT                                                         >  2:433800/1‑239                                                                                                                                                                                             CCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACACCGAGTTAGTCTTTCTTTTCGGA                                                  >  1:1097083/1‑238                                                                                                                                                                                                 tttatgtttggttTATTCTCGGGTGTGAATTTGGGGGCAACTACCCATAAGCCGTAAC‑TTAAGGATTGAACCATCTGAATAATGCGACGCCGTGGTGCCTTGTTAAGAGGATGCCTCGCTTTCTTCAATTGCGTTTTGTAGGCTGTCAGGAATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTGTCGGATCCGG                                             <  1:698964/226‑1                                                                                                                                                                                                          CCTCTATTCTCGTCGTTGAATGTGGGGGAAACATCACATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTTTGCTGTCAGGGATAC‑TGTACCCCGACTTGCCACCTGTTAGCTCCAGAGTACCATTTTTTTTTTTCTCCCCAACGAGTTAGTTTTTTTTTTCGGATCGGGGACTTCCGG                                    >  1:756034/1‑239                                                                                                                                                                                                          CCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGG                                                                                                                                               <  1:611086/133‑1                                                                                                                                                                                                          CCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGG                                                                                                                                               >  2:611086/1‑133                                                                                                                                                                                                              TATTCTCGGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGCGTTAGTTCTTCTTTTCGGATCCGGACTTTCTGGGGGG                                >  2:262411/1‑239                                                                                                                                                                                                                   tgGGCGTTGAATGGGGGGGAAACTTCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAAT                           <  2:979699/237‑1                                                                                                                                                                                                                   TCGGCGTTGAATGTGGGGCAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGGACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGAAGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGAAAC‑TGTCCCACGAATTGCCACCTGTAAGCTCACAATGACCATTTTTGTTATTTCCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGgac                            >  1:228813/1‑235                                                                                                                                                                                                                     GGCGTTGAATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGCTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCCCTTCTGGGGGGGAAATCC                         >  2:98624/1‑239                                                                                                                                                                                                                        cggattagtggggatttcccCCCAT‑AGCGCTAAC‑TTAAGGGTTTAATCATCTGAAGAAGGCGACGCCTCGGTGCCTGGTTAAGACGGTGCCTCGCTTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCG                     <  1:1051383/219‑1                                                                                                                                                                                                                             tatgctggttttccTCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGATTCCGTGGCCTCGGTTCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGG                 <  1:42078/225‑1                                                                                                                                                                                                                             acgggggggggtatTCCCATAAGCGTTTAC‑CTAGGGGTTGAACCAGCTTGAAAATCGGGCGGCTCGTTGCCCCGGTAAGACGATGCCTCGCGTTTTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGG                 <  1:859663/225‑1                                                                                                                                                                                                                             aaggggggggatggTCCCATAAGCCCGTAC‑TTAAGGGTTGAACCATCTGAAGAATGGGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGG                 <  2:1207120/225‑1                                                                                                                                                                                                                             ATGTGGGGGAAACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGG                 <  2:553490/239‑1                                                                                                                                                                                                                                        ACATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCCGCGATGGCTGGATTATt       >  2:639130/1‑237                                                                                                                                                                                                                                         cacCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGC                                                                                                                  >  2:1024249/4‑130                                                                                                                                                                                                                                         cacCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGC                                                                                                                  <  1:1024249/127‑1                                                                                                                                                                                                                                          ATCCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCCGATGACCATTTTTGTTATTCTCCACAACGCGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGTGGGGAAATCCATCGATGGCTGGATTATGTCG    >  2:1237117/1‑239                                                                                                                                                                                                                                            CCCATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTC  <  2:3232/239‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACTGCTCGATACCATGTACGATCTGCCGTCCATGGAAGACGTCGAAAAAGTGGTTATCGACGAGTCGGTAATTGATGGTCAAAGCAAACCGTTGCTGATTTATGGCAAGCCGGAAGCGCAACAGGCATCTGGTGAATAATTAACCATTCCCATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/458562‑458799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccATAAGCGCTAAC‑TTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATAC‑TGTCCCACGAATGGCCACCTGTAAGCTCCAGATGACCATTTTTGTTATTCTCCACAACGAGTTAGTTCTTCTTTTCGGATCCGGCACTTCTGGGGGGGAAATCCAGCGATGGCTGGATTATGTCGTC  <  NC_000913/609347‑609112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.