New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	458787 =	4 (0.100)	34 (0.860)	31/278	0.2	89.7%	intergenic (+87/‑101)	clpX/lon	ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
	?	NC_000913	608011 =	NA (NA)					intergenic (+23/‑54)	hokE/insL1	toxic polypeptide, small/IS186 transposase

TGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607870‑608148                                                                                                                                               |                                                                                                                                          tGCTGTGTTTAGCGGTGCTGGGATTTACGCTTCCGGTCGGAGCAC‑AGAATTGTTGGTGTGCGGTGAAGAAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCAt                                                                                                                                          <  2:301208/143‑1 (MQ=255) tGCTGTGTTTAAGGGTGCTGGGATTTCCTCTTACGG‑CGTTATCTGCGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCAt                                                                                                                                          <  2:689019/143‑1 (MQ=255)   cTGTGTTTAAAGGTGCTGGGATTTACGCTTCTGGGCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGGAGCCGGTGTGCGGGGGGTCAGCCCAtga                                                                                                                                        >  1:187839/1‑141 (MQ=255)         ttAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAGGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTAAGAACCGAAGAGGTAGCCGTTGTGCGGGGAGTAGTCGCATAAGCGGTa                                                                                                                                  >  2:668380/1‑143 (MQ=255)           aaCGGTGCTGGGATTTACGCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGACGAAGTAGCCGATGTGCGGGGACTAAACCCACACGCGCGAAc                                                                                                                                >  1:706872/1‑143 (MQ=255)               gTGCTGGGATTTACGCTTCTTGTCTTAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTaa                                                                                                                            <  2:315970/143‑1 (MQ=255)                   tGGGATTTACGCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGt                                                                                                                        >  1:365906/1‑143 (MQ=255)                    gggATTTACGCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGACGTAGCCGTTGTGCGGGTAGTAATCCCATAAGCGCTAACTTAAGGGtt                                                                                                                       >  2:66181/1‑143 (MQ=255)                    gggATTTACGCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATAGTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGCGCAATCCCATGCGCGCTTCCTTCTGGGtt                                                                                                                       >  2:634138/1‑143 (MQ=255)                             gCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATCTGCGCTATCTTAAGGGATGTGGTATTa                                                                                                              >  2:318948/1‑143 (MQ=255)                              cTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAc                                                                                                             <  2:173488/143‑1 (MQ=255)                                             t‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                              >  1:156870/1‑143 (MQ=255)                                              tgggtgtgtgAGTTTCCTGTGAAGGGACGTAAGAGTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGGGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTa                                                                                              <  1:242377/139‑1 (MQ=37)                                                     gtgAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGCTGTGGTATTACGCCTGAGATGCTTTAACATGcc                                                                                       >  1:507336/1‑143 (MQ=255)                                                            gaCGGTGAAGGAACGTAGTTTTGAGTTTAAGGTCGTTTTCGCTTAGGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAt                                                                                <  1:343339/142‑1 (MQ=25)                                                                   aaGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGATATTACGCCTGATATGATTTAACGTGCCGATGAATTACtctc                                                                         >  2:577173/1‑143 (MQ=255)                                                                       aaCGTAATATTGAGTTTAAGGTTGTTCTCGTTTACGAACCTAATAATTAGCTGTTGTGCGGTGAGTAATCCCATAAGCGCTAACTTAAGTGTTGTGGTATTACGCCTTATATGATTTAACGTGCCGATGAATTACTCTCACGa                                                                     <  1:647339/143‑1 (MQ=21)                                                                           tAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACATGCCGATGAATTACTCTCAAGATAAc                                                                 >  2:381531/1‑143 (MQ=255)                                                                                 ggAGCTTGAGGCTGTTTTCGCTTACTAACCGAGGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAATGTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCa                                                           <  1:563378/142‑1 (MQ=18)                                                                                  gAGTTTAAGGCTGTTCCCGCTTACGAACCGAAGAACTAGCCTTGGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAg                                                          <  1:5559/143‑1 (MQ=255)                                                                                     tttAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTGTTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTAGTcaacaa                                                       >  2:410854/1‑143 (MQ=255)                                                                                        aaGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTc                                                    <  2:465865/143‑1 (MQ=255)                                                                                          ggCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAAACTCACGATAACTGCTCAGCAATTCTg                                                  >  2:585658/1‑143 (MQ=255)                                                                                           gCTGTTCTCGCTTACTAATCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 <  2:676302/143‑1 (MQ=255)                                                                                           gCTGTTCTCGCTTACTAACCTATGTAGTTTCCGTTGTTCTGTGAGTAATCCCATAAGCGCGAACTTAAGGGTTGCGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 <  2:180954/143‑1 (MQ=14)                                                                                             tGTTCTTTCTTATGATCCGAAGAAGCAGCCGTTGTGTGTGGAGTAATCCTATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGcc                                               <  2:448361/143‑1 (MQ=17)                                                                                                        aCGAACCGAAGAAGTAGACGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTGAAGGGATGGGGTATTACGACTGATATGATTTAACGTGCCGATGAATTACTCTCACAAGAACTAGTAAGGAACTCCGACCTATAATGGTaa                                    >  1:296980/1‑143 (MQ=17)                                                                                                              cGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACTGCTGATATGATTTAACGTGCCGATGAATTACTCTCACGCTAACTAGCCAGCAATTCCGGCCCATATTGGTAACGCCga                              >  1:287435/1‑143 (MQ=17)                                                                                                               gaagaaGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgca                             >  1:189589/1‑141 (MQ=255)                                                                                                                aagaagTAGCCGTTGTGCGAGGAGTAATCACAAAAGCGCTAACATAAGGATAGCGGTATTACTCCTGATATCATTCAACCAACCGATGAACTACTCACACGATCACAGGTCAGCAATTCTGACCCatatcacaacacaccaaa                            >  1:507798/1‑129 (MQ=255)                                                                                                                  taggtatctgtgctgCGGGCATTAATCCCATAAGCGCTAACTTAAGGGTTGCGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTTTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaagaa                          <  1:69418/130‑1 (MQ=11)                                                                                                                       aGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGa                     <  2:365906/143‑1 (MQ=255)                                                                                                                        gCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTCGAt                    >  2:709476/1‑143 (MQ=255)                                                                                                                        gCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTAGCCCATATTGGTAAGCCAGAAGAACTGGAt                    >  2:483319/1‑143 (MQ=255)                                                                                                                                        tAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCCTTTTGGTAAGCCCGAAGGAGTGGCTCCTTCGGCCCGTTATg    >  2:110918/1‑143 (MQ=11)                                                                                                                                          aTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGAATACTTCGGCACGTAATGcc  >  2:324313/1‑143 (MQ=11)                                                                                                                                               |                                                                                                                                          TGCTGTGTTTAACGGTGCTGGGATTTACGCTTCTGGTCGGAGACT‑CGCTGTGTGAGTTTACGGTGAAGGAACGTAATATTGAGTTTAAGGCTGTTCTCGCTTACGAACCGAAGAAGTAGCCGTTGTGCGGGGAGTAATCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/607870‑608148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.