Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,049,990 Δ12 bp noncoding (93‑104/109 nt) spf → Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4049990 4050001 12 60 [0] [0] 60 spf Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 40499890 (0.000)58 (0.810) 45/282 0.6 100% noncoding (92/109 nt) spf Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
?NC_000913 4050002 = NA (NA)noncoding (105/109 nt) spf Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent

TTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAA  >  NC_000913/4049849‑4050131
                                                                                                                                            |                                                                                                                                              
ttACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATtt                                                                                                                                              >  1:325467‑M1/1‑141 (MQ=255)
 tACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTTGCTGAATATTTTAGCCTCCCCAGTCCATAATttt                                                                                                                                             >  2:433991‑M1/1‑140 (MQ=255)
   cAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTATTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATtttta                                                                                                                                           >  2:1242654‑M1/1‑138 (MQ=255)
    aaaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCCGTCAGTAATttttat                                                                                                                                          >  1:397078‑M1/1‑137 (MQ=255)
    aaaaaGTACTTGCTCAACTGAACAAAAAAGAGTAAAGTTAGTCGCATAGAGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGTCTGAATATTTTAGCCGCCCCAGTCAGTAATttttat                                                                                                                                          <  1:33708‑M1/143‑7 (MQ=255)
     aaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttatt                                                                                                                                         <  2:826152‑M1/143‑8 (MQ=255)
     aaaaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTAACGTAATCGGATTTGGCTGAATATTTTAGCCGCACCAGTGAGTAATttgtcat                                                                                                                                         >  1:995939‑M1/1‑136 (MQ=255)
       aaGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgg                                                                                                                                       <  2:837794‑M1/143‑10 (MQ=255)
               tCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGGAATttttattgggcgaaagg                                                                                                                               >  2:323614‑M1/1‑126 (MQ=255)
                  gaactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGTTGGTCTATCTTTCGGATGTGTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaa                                                                                                                            <  2:464569‑M1/143‑21 (MQ=255)
                  gaactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaa                                                                                                                            <  2:313627‑M1/143‑21 (MQ=255)
                  gaactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCAGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaa                                                                                                                            <  2:49984‑M1/143‑21 (MQ=255)
                  gaactgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAAAGTTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaa                                                                                                                            <  2:1183384‑M1/143‑21 (MQ=255)
                      tgaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagcaaagatc                                                                                                                        >  2:84505‑M1/1‑119 (MQ=255)
                       gaacAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGAGGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatcc                                                                                                                       <  2:467262‑M1/143‑26 (MQ=255)
                           aacaaagagTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATATTTCAGACCTTTTACTTCAGGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttcttgggcggaagaaaagatccgtaa                                                                                                                   >  2:495673‑M1/4‑114 (MQ=255)
                           aaaaaaGAGTAAAGTTAGGCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaa                                                                                                                   <  2:602276‑M1/143‑30 (MQ=255)
                                 gagTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctg                                                                                                             <  1:919402‑M1/143‑36 (MQ=255)
                                       atgtagtCGCTTAGTGTACAGAGGTACGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgc                                                                                                       <  1:854030‑M1/140‑42 (MQ=255)
                                       aGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTTTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgc                                                                                                       <  1:1187214‑M1/143‑42 (MQ=255)
                                             tCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttcttgggcgaaagaaaagatccgtaatgcctgatgcgctatgct                                                                                                 >  1:28985‑M1/1‑96 (MQ=255)
                                             tCGCGTAGGGGACAGAGGTAAGATGTTCTATCTATCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtt                                                                                                 <  2:993731‑M1/143‑48 (MQ=255)
                                                cgTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaacgatccgtaatgcctgatgcgctatgtttat                                                                                              >  2:150904‑M1/1‑93 (MQ=255)
                                                cgTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttat                                                                                              <  1:693858‑M1/143‑51 (MQ=255)
                                                cgTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtctat                                                                                              >  1:916513‑M1/1‑93 (MQ=255)
                                                  tAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggggaaagataagatccgtaatgcctgatgcgctatgtttatca                                                                                            <  2:530683‑M1/143‑53 (MQ=255)
                                                     ggTACAGAGGTAAGATGTTGTATCTTTCAGACCTTCTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagcaaagtttcgcaatgcctgatgcgctatgtttatcaggc                                                                                         <  1:92162‑M1/143‑56 (MQ=255)
                                                           gagGTAAGAGGTTCTATCTTTCAGACCTTTCACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacgg                                                                                   <  1:693868‑M1/143‑62 (MQ=255)
                                                              gTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaacgaaaagatccgtaatacctgatacgctatgttgatcagtccaacggtac                                                                                >  1:255475‑M1/1‑79 (MQ=255)
                                                                         tATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatct                                                                     >  1:1947‑M1/1‑68 (MQ=255)
                                                                            cTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctatt                                                                  <  2:644199‑M1/143‑79 (MQ=255)
                                                                              ttCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAGTATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattga                                                                >  2:1048926‑M1/1‑63 (MQ=255)
                                                                                   aCCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgctgcgctatgtttatcaggccaacggtagaactgtaatctattgaatttc                                                           >  1:911392‑M1/1‑58 (MQ=255)
                                                                                   aCCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggcaaacggtaaaattgtaatctcttgaattta                                                           >  1:669048‑M1/1‑58 (MQ=255)
                                                                                      ttttACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaattcctgatgcgctatgtttatcaggccaacggtagaattgtaatctatggaatttccgg                                                        >  1:681524‑M1/1‑55 (MQ=255)
                                                                                           cTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccgg                                                   <  2:834102‑M1/143‑94 (MQ=255)
                                                                                            ttCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccgga                                                  >  2:663993‑M1/1‑49 (MQ=255)
                                                                                            ttCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccgga                                                  >  2:439078‑M1/1‑49 (MQ=255)
                                                                                                  tAAGCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgcc                                            <  2:660328‑M1/143‑101 (MQ=255)
                                                                                                        tatTTGGCTGTATATTTTAGACGCCCCAGTCAGTAATttatagtgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatcc                                      <  2:1048994‑M1/142‑107 (MQ=255)
                                                                                                        gATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttagcaggccaacggtagaattgtagtctagtgaatttacgtgccggatacgcgacattc                                      >  2:1222345‑M1/1‑37 (MQ=255)
                                                                                                           ttGGCTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggc                                   <  1:972858‑M1/143‑110 (MQ=255)
                                                                                                               ttgAATATTTTAGCCGCTCCAGTCAGGAATttatattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaa                               <  2:270057‑M1/142‑114 (MQ=255)
                                                                                                               cTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaa                               >  2:434692‑M1/1‑30 (MQ=255)
                                                                                                               cTGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaa                               <  2:325467‑M1/143‑114 (MQ=255)
                                                                                                               atgAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaa                               >  1:217895‑M1/2‑30 (MQ=255)
                                                                                                                tGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaag                              >  1:1045121‑M1/1‑29 (MQ=255)
                                                                                                                tGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttataaggtcatcctcattattgtaatctattgaatttacgggccggatacgccacatccggcaaaag                              >  2:284647‑M1/1‑29 (MQ=255)
                                                                                                                tGAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaaaatccatagtgcctgctgcgctccgcttatcaggccaacggtagaattgtaatctattgactttacgggccggatacgccacatccggcacccg                              >  2:409065‑M1/1‑29 (MQ=255)
                                                                                                                 gAATATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcaccagc                             >  1:173179‑M1/1‑28 (MQ=255)
                                                                                                                  aaTATTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaagca                            >  1:214643‑M1/1‑27 (MQ=255)
                                                                                                                   atatTTTAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaagcat                           <  1:900126‑M1/143‑118 (MQ=255)
                                                                                                                      ttttAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaagcattaa                        <  2:770536‑M1/143‑121 (MQ=255)
                                                                                                                      ttttAGCCGCCCCAGTCAGTAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaagcattaa                        <  2:418608‑M1/143‑121 (MQ=255)
                                                                                                                                    ggcagtaaTttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaagcattaaggcaagaaaattat          <  2:198729‑M1/141‑135 (MQ=255)
                                                                                                                                     tcagtAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttccgggccgcatacgccacatccggcacaagcattaaggcaagaaaattatt         >  1:936292‑M1/1‑8 (MQ=255)
                                                                                                                                      cagtAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgccacatccggcacaagcattaaggcaagaaaattattc        <  1:1048926‑M1/143‑137 (MQ=255)
                                                                                                                                       agtAATttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgttccggatacgccacatccggcacaagcattaaggcaagaaaataattcg       >  1:747629‑M1/1‑6 (MQ=255)
                                                                                                                                            tttttattgggcgaaagaaaagatccgtaatgcctgatgcgctatgtttatcaggccaacggtagaattgtaatctattgaatttacgggccggatacgcgccatccggcacatgcagtaaggcaagaaaattattcgccgtc  >  1:163047‑M1/1‑1 (MQ=255)
                                                                                                                                            tttttagtgggcgaaagaaaagatccttaatgcctgatgcgctatgtttatcaggccaacggtagaagtgtaatctattgaatttacgggccggatacgccacatccggcacaagcattaaggcaagaaaattattcgccgtc  <  2:397078‑M1/143‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                              
TTACAAAAAGTGCTTTCTGAACTGAACAAAAAAGAGTAAAGTTAGTCGCGTAGGGTACAGAGGTAAGATGTTCTATCTTTCAGACCTTTTACTTCACGTAATCGGATTTGGCTGAATATTTTAGCCGCCCCAGTCAGTAATGACTGGGGCGTTTTTTATTGGGCGAAAGAAAAGATCCGTAATGCCTGATGCGCTATGTTTATCAGGCCAACGGTAGAATTGTAATCTATTGAATTTACGGGCCGGATACGCCACATCCGGCACAAGCATTAAGGCAAGAAAA  >  NC_000913/4049849‑4050131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.