New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4587994 (0.060)94 (1.350) 74/276 0.0 96.0% intergenic (+99/‑89) clpX/lon ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
?NC_000913 = 609347 NA (NA)intergenic (+170/+112) insL1/entD IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex

GAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACT  >  NC_000913/609211‑609486
                                                                                                                                        |                                                                                                                                           
gAGCTTAAAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGt                                                                                                                                       <  2:230335/143‑1 (MQ=14)
  gCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTaa                                                                                                                                     >  2:271024/1‑143 (MQ=32)
      aCAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCATCGCATTCTTCAGATGGTTCAATCCGTAAGTTAGCGTTGATGGGAgacgtccc                                                                                                                                 >  1:20682/1‑136 (MQ=11)
         tgggggcagtCGTGGGGGAGTAGGCCGGACAGCCTACAAAACGCAAGTGGAGAACGCGAGGCATCGTCTTAATGAGGGTCCGAGGCGTCGCATTCTTCAGATGGTTCAAACCTTAGGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                              <  1:1096430/134‑1 (MQ=11)
         gggggCCCTTCGTGTGCCATTATGCGTGACTGCCTACAAAACGCAATTGACGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                              <  1:729978/140‑1 (MQ=11)
         ggTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGc                                                                                                                              <  2:748784/143‑1 (MQ=38)
          gTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAACCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCCACCCTTAAGTCAGCGCGTGTGGGAGTAATCCCCGCa                                                                                                                             >  1:1119616/1‑143 (MQ=11)
             gCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCatat                                                                                                                          >  2:1206566/1‑143 (MQ=40)
             gCCATTCGTGGGACAGTAGCCCTGACAGCCTACAAAACGCGATTGAAGAGCGCGGTTTTTTGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCatat                                                                                                                          <  1:143415/143‑1 (MQ=14)
                aTTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCg                                                                                                                       >  2:160802/1‑143 (MQ=255)
                aTTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCg                                                                                                                       <  2:202365/143‑1 (MQ=255)
                   cGTGGGACAGTATCCCTGACGGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGtt                                                                                                                    <  1:568735/143‑1 (MQ=255)
                     tGGGACAGTATCCCTGACAGCCAACAAAACGCAATTAAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgt                                                                                                                  >  2:808149/1‑143 (MQ=255)
                        gACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTGGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcag                                                                                                               >  1:781189/1‑143 (MQ=255)
                        gACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGCTTgtcag                                                                                                               >  1:619327/1‑143 (MQ=255)
                          cAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCAGTCGTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGCCGTAATCCCCCCATATCCGGTTgtcaggt                                                                                                             >  1:442406/1‑143 (MQ=14)
                            gtttCCCTGCGAGTCGACAAATCGCAATTGAAGTTCGCGTGGCATCGTCTTAACGCGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtcaggtca                                                                                                           <  1:192959/140‑1 (MQ=17)
                            gTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAAGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTgtagggtca                                                                                                           >  1:34514/1‑143 (MQ=255)
                               tccgtaaCAGCCTACAAAACGCAAGTGAAGAACGCGAGGCATCGTCGTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGTTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGa                                                                                                        <  2:275877/137‑1 (MQ=17)
                               tCCCTGACAGCCTACAACACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGa                                                                                                        <  2:235202/143‑1 (MQ=255)
                                 ccTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTACTCCCCGCATATCCGGTTGTCAGGTCAGGATg                                                                                                      >  2:1236458/1‑143 (MQ=255)
                                  ctggtggCCTACAAAACGGAAGTGAAGGACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATgg                                                                                                     <  1:88178/137‑1 (MQ=18)
                                   cgACAGCCTACAAAACGCAATTGAAGGACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGGCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGt                                                                                                    <  2:557626/142‑1 (MQ=255)
                                       aGCCTAAAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAgg                                                                                                <  1:1016938/143‑1 (MQ=255)
                                         ccTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACAGAGGCGTCGCATTCTTCAGGTGGTTCAACGCTTAAGTGAGCGCTTATGGGAGTAATCCCCGCATATCCGGCTGTCACGTCAGGAGGGTAAGGCa                                                                                              >  1:605113/1‑143 (MQ=17)
                                          cTACAATCCGCAATTGACGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAc                                                                                             <  1:128779/143‑1 (MQ=255)
                                          cTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAc                                                                                             >  2:173691/1‑143 (MQ=255)
                                          cTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAc                                                                                             >  2:1051254/1‑143 (MQ=255)
                                            aCAAAACGCAATTGAAGAACGCGAGGCCTCGTAATAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATCGTAAGGCACCt                                                                                           >  2:531153/1‑143 (MQ=255)
                                            aCAAAACGCAATTGAAGAACGCGAGGCATCCTCTTAACGAGGCACCGAGGCGTCGCATTCTGCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGGAAGGCCCCt                                                                                           >  2:531857/1‑143 (MQ=255)
                                              aaaaCGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGc                                                                                         <  1:248281/143‑1 (MQ=255)
                                                gaCGCAGTTGAAGTGCGCGAGTCATCGTCTTAACGAGGCACCGCGGCGTCGTATTCTGCAGATGGTTCAACCCTTAGGTTAGCGCTTATGGGAGTAATCCCCGCTTATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCtt                                                                                       <  1:568063/142‑1 (MQ=21)
                                                   gCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTac                                                                                    <  2:832105/143‑1 (MQ=255)
                                                   gCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATACCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTac                                                                                    >  2:394901/1‑143 (MQ=255)
                                                      aTTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACCCt                                                                                 >  1:826188/1‑143 (MQ=255)
                                                            gaaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGcc                                                                           >  2:75682/1‑143 (MQ=255)
                                                             aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGccc                                                                          >  2:1085047/1‑143 (MQ=255)
                                                             aaCGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGccc                                                                          <  2:797972/143‑1 (MQ=255)
                                                                gcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCGGGATAGTAACGCACCTGACTTACTCTTTCGCCCGTg                                                                       <  1:271024/143‑1 (MQ=21)
                                                                 cgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATGCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTgg                                                                      <  2:826419/143‑1 (MQ=255)
                                                                  aacgcggcGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGt                                                                     <  2:221750/136‑1 (MQ=255)
                                                                     gCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCCTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAg                                                                  >  2:1120310/1‑143 (MQ=255)
                                                                         cGTCCTACCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGAt                                                              <  2:442406/143‑1 (MQ=255)
                                                                          gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATg                                                             >  1:784005/1‑143 (MQ=255)
                                                                           tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCATTTGCTTTACACTTTCGAACGTGGTCAGTGATgg                                                            >  2:133203/1‑143 (MQ=255)
                                                                              tAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTg                                                         >  2:298158/1‑143 (MQ=255)
                                                                               aaCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGAGAATATGGGAGGAATCACAGACGATCTGGGTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGc                                                        >  2:1245237/1‑143 (MQ=25)
                                                                                  gAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCggg                                                     <  2:744178/143‑1 (MQ=255)
                                                                                     gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTGGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTTGTCAGCGATGGCTGCGGGCGa                                                  >  1:1014027/1‑143 (MQ=255)
                                                                                      cACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTACGGAGGGTAAGGCACCTGCTTTACACTTTCGCCCGGGGTCAGTGGTGGCTGCGGGCGaa                                                 >  1:615733/1‑143 (MQ=37)
                                                                                       aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAAt                                                >  2:532269/1‑143 (MQ=255)
                                                                                       aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAAt                                                <  2:220977/143‑1 (MQ=255)
                                                                                        cagaggggtcggggtcttcAGATGGGTCAGCCCTGAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGGCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATc                                               <  2:1149574/129‑1 (MQ=255)
                                                                                         cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCg                                              >  1:1163959/1‑143 (MQ=255)
                                                                                         cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCATGATCAGTGATGGCTGCGGACGAATCg                                              >  2:391538/1‑143 (MQ=255)
                                                                                         cGAGGCGTCGCATTCTTCAGATGCTTCAACCCTTAAGTTAGCGCTTATGGGAGAAAGCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCCTCACACTTCCGCCCGCGGCCAGCGATCGCTGCGGGCGAATCg                                              >  1:1235295/1‑143 (MQ=25)
                                                                                              cGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATCCCCGCATGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCa                                         >  1:1155841/1‑143 (MQ=255)
                                                                                                  gCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAtg                                     >  2:306799/1‑143 (MQ=255)
                                                                                                    aTTTTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAtgtt                                   <  2:865505/143‑1 (MQ=255)
                                                                                                       cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTc                                >  1:630988/1‑143 (MQ=255)
                                                                                                        ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCa                               >  2:379955/1‑143 (MQ=255)
                                                                                                        ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCa                               >  2:1011615/1‑143 (MQ=255)
                                                                                                         tcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCaa                              >  1:299523/1‑143 (MQ=255)
                                                                                                          ccgattggtCAACCCTTAGGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAAt                             <  1:735425/135‑1 (MQ=255)
                                                                                                             aTGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTCTCAtttta                          >  2:703548/1‑141 (MQ=255)
                                                                                                               ggTTCCACCCTGGAGTTAGCGCTTATGTGAGTACTCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCGCCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATc                        <  1:571378/143‑1 (MQ=255)
                                                                                                                 ttCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCgt                      <  2:1058764/143‑1 (MQ=255)
                                                                                                                    aaCCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGtt                   >  1:831491/1‑143 (MQ=255)
                                                                                                                       ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGc                >  1:352948/1‑143 (MQ=255)
                                                                                                                        cTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTGACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAAGCGTACCCGATGTTGGCCATTAATCGTGTTGCca               >  1:312553/1‑143 (MQ=255)
                                                                                                                          tAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGcaca             >  2:591778/1‑143 (MQ=255)
                                                                                                                           aaGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACCTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAg            <  2:114363/143‑1 (MQ=255)
                                                                                                                             gTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCg          >  2:1133247/1‑143 (MQ=255)
                                                                                                                              ttAGCGCTCATGGTAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGCACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGt         <  2:811921/143‑1 (MQ=255)
                                                                                                                               tAGCGCTTATGGGAGTAATCCCCGCACATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGtt        <  1:535903/143‑1 (MQ=255)
                                                                                                                                aGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTa       >  2:930790/1‑143 (MQ=255)
                                                                                                                                   gcccaTGGGCGTAATCCCCGCATATCCGGGTGTCAGGTCAGGATGGTAAGGCACCTGCTTTCCACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGCACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGa    <  2:251098/139‑1 (MQ=255)
                                                                                                                                    cTTATGGGAGTAATCCCCGCATATCCGGGTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGAc   <  2:1091711/143‑1 (MQ=255)
                                                                                                                                     ttATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACt  >  2:111227/1‑143 (MQ=255)
                                                                                                                                        |                                                                                                                                           
GAGCTTACAGGTGGCCATTCGTGGGACAGTATCCCTGACAGCCTACAAAACGCAATTGAAGAACGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACT  >  NC_000913/609211‑609486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.