Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,299,499	Δ1,199 bp	intergenic (+254/‑485)	ychE → / → oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1299499–1300693	1300697	5–1199	85 [0]	[0] 86	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	81 (1.160)	65/276	0.0	100%	intergenic (+253/‑1684)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+1453/‑484)	ychE/oppA	UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

AAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT  >  NC_000913/1299356‑1299639                                                                                                                                                |                                                                                                                                              aaaTTACAGTTAGTTATAAGGATTTCCTTAACCGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCTTTTGGTAGAGGAAAGTA‑CTAA                                                                                                                                               >  1:244245‑M1/1‑143 (MQ=255)    ttACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTTTGTTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTGTGGTAGAGGAAAGTG‑CTAAata                                                                                                                                            <  2:454641‑M1/143‑4 (MQ=255)    ttACAGTTAGTTATAAGGATTTCCTTAACTGCTTATCCTCACCATCATGTTATTTTCGCCACATTATAATCCTCGGCTTGCTCAAGAATAATTGAAATGATATTCTTAATTACACTGCCCTTGGAAGAGGAAAGT‑‑CTAAaata                                                                                                                                           >  1:65870‑M1/1‑139 (MQ=255)       cAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataata                                                                                                                                         <  1:466250‑M1/143‑7 (MQ=255)        agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCTTCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataa                                                                                                                                        <  1:341512‑M1/143‑8 (MQ=255)        agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATACTCATGAGCTTCCGCCAGGATCATTGACATGATATTATTCAGTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataatag                                                                                                                                        >  1:441885‑M1/1‑136 (MQ=255)        agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataa                                                                                                                                        <  2:782563‑M1/143‑8 (MQ=255)          ttagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatc                                                                                                                                      >  1:221134‑M1/1‑134 (MQ=255)           tagttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatca                                                                                                                                     <  1:777043‑M1/143‑11 (MQ=255)              ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGACATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaatt                                                                                                                                  <  2:716756‑M1/143‑14 (MQ=255)              ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaatt                                                                                                                                  <  2:826977‑M1/143‑14 (MQ=255)              ttaTAAGGATTTCCTTAACTGCTTCGCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaatt                                                                                                                                  <  1:285798‑M1/143‑14 (MQ=255)                 taAGGATTTGCTTAACTGCTTCTGCTCACCATCATGTTGTTTTCGCCACATCATAATCCTGGGCTTACTGAAGAATAATTGAAATGATATTATTAATTCCACTGCATTTGGTAGAGGAAAGGG‑ATAAataataatcaattgtt                                                                                                                               >  1:395697‑M1/1‑127 (MQ=255)                          ccTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGACTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGACTTTGGTAGAGGAAAGTG‑CTAAatattaatcatttgttaaattattg                                                                                                                      >  1:228832‑M1/1‑118 (MQ=255)                           cTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgt                                                                                                                     <  2:221134‑M1/143‑27 (MQ=255)                                 tGCTTCTCCTCACCGTCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcattt                                                                                                               <  1:818890‑M1/143‑33 (MQ=255)                                   cTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttca                                                                                                             <  2:850909‑M1/143‑35 (MQ=255)                                    ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaactgttaaattattgtgcatttcac                                                                                                            >  1:576201‑M1/1‑108 (MQ=255)                                         ctcACGATCCTGTTATTTTCGCCACCTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                       <  2:567422‑M1/143‑41 (MQ=255)                                         ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataatactcaattgttaaattattgtgcatttcactactg                                                                                                       >  1:568196‑M1/1‑103 (MQ=255)                                         ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactg                                                                                                       >  1:480973‑M1/1‑103 (MQ=255)                                                    gTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                            <  1:732068‑M1/143‑52 (MQ=255)                                                    gTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                            >  2:421353‑M1/1‑92 (MQ=255)                                                     ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatca                                                                                           >  2:1142296‑M1/1‑91 (MQ=255)                                                     ttATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttaactactggaactgtaatca                                                                                           >  1:541345‑M1/1‑91 (MQ=255)                                                        ttttCGCCACATCATAATCCTGAGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCAACTGCCTTTGGTATAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactgaactgtaatcagaaa                                                                                        <  1:1017365‑M1/143‑56 (MQ=255)                                                         tttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaa                                                                                       >  2:1006126‑M1/1‑87 (MQ=255)                                                          ttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                      <  1:388349‑M1/143‑58 (MQ=255)                                                          ttCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaa                                                                                      >  1:328165‑M1/1‑86 (MQ=255)                                                          ttCGCCAAATCATAATCCTGGTCGTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactgtaactgtaatcagaaaa                                                                                      <  1:220570‑M1/143‑58 (MQ=255)                                                           tCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaag                                                                                     >  2:956895‑M1/1‑85 (MQ=255)                                                             gCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagat                                                                                   <  2:545489‑M1/143‑61 (MQ=255)                                                              gcacatCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                  <  1:389611‑M1/142‑62 (MQ=255)                                                              ccACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                  <  1:1063178‑M1/143‑62 (MQ=255)                                                                 catcatAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagac                                                                               <  2:217939‑M1/143‑65 (MQ=255)                                                                   tcatAATCCTGGGCCTGCTAAAGAATTATTTAAATGATATTATTAATTCCACTGCCTTTGGTAGACAAACTTC‑CTAAatcacaatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacat                                                                             <  1:82121‑M1/143‑67 (MQ=255)                                                                        cgcctgGGCGTGCTGAAGAAGAAGTGAGATGATATGATGAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattggtaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                        <  2:194850‑M1/141‑72 (MQ=255)                                                                           cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcc                                                                     <  1:662356‑M1/143‑75 (MQ=255)                                                                           cTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagcc                                                                     <  2:115241‑M1/143‑75 (MQ=255)                                                                             gggCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaa                                                                   >  2:1020237‑M1/1‑67 (MQ=255)                                                                              ggCCTGCGGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaat                                                                  <  1:640481‑M1/143‑78 (MQ=255)                                                                                     tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatt                                                           >  1:647445‑M1/1‑59 (MQ=255)                                                                                      gaagaaTAATTGAAATGATATTATTAATTACACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatacacatgcttagccaatctctattt                                                          >  1:730148‑M1/1‑58 (MQ=255)                                                                                      gaagaaTAATTGAAATGATATTATTAAGTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattt                                                          <  1:330208‑M1/143‑86 (MQ=255)                                                                                         gaaTAATTGAAATGATTTTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgat                                                       <  1:488909‑M1/143‑89 (MQ=255)                                                                                          aataatTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgatt                                                      >  2:342972‑M1/1‑54 (MQ=255)                                                                                               ctggaattatATGACTAATCCCCCTGCCCGTGGTAGAGGCAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagttagacatgcttagccaatctctatttgattgaatt                                                 <  2:646916‑M1/139‑95 (MQ=255)                                                                                                  aaaTGATCTTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                              <  1:137753‑M1/143‑98 (MQ=255)                                                                                                   aaTTATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                             <  1:169257‑M1/143‑99 (MQ=255)                                                                                                   aaTGATTTTATTAATTCCACTGCCTTTGTTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                             <  2:323106‑M1/143‑99 (MQ=255)                                                                                                   aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAgtaataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatctgattgaattgaaa                                             >  2:143620‑M1/1‑45 (MQ=255)                                                                                                     tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatgtctattagattaaagtgaacga                                           >  1:1058580‑M1/1‑43 (MQ=255)                                                                                                     tGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaaga                                           <  2:488987‑M1/143‑101 (MQ=255)                                                                                                      gATATTATTAATTCCACTGCCTTTGGTAGAGG‑GAGTGTCAAAataataatcaattgttaaattattgtgcatttcactactgaaactgtaagcagaaaagatatacatgcttatccaatctctatttgattgaattgaaagat                                          >  1:1091125‑M1/1‑42 (MQ=255)                                                                                                       atatTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgcattgaacgatg                                         >  2:615213‑M1/1‑41 (MQ=255)                                                                                                        tattatTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgt                                        <  2:172458‑M1/143‑104 (MQ=255)                                                                                                          ttattaATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaatggaaagatgttt                                      >  2:650565‑M1/1‑38 (MQ=255)                                                                                                            attaATTCCACTGCCTTTGGTAGAGGACAGTG‑CTAAataataatcaattgttgaattaccaacaaattaactacttgaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgt                                    >  1:888369‑M1/1‑36 (MQ=255)                                                                                                            attaATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaaatattgtgcatttcactactggaactgtaatcagaaaagatagacatgattagccaatctctatttaattgaattgaaagatgcttgt                                    >  1:1193126‑M1/1‑36 (MQ=255)                                                                                                             ttaATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataattaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaggatgtttgtt                                   >  1:686228‑M1/1‑35 (MQ=255)                                                                                                             ttaATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcagttcactactggaactgtaataagaaaagatagaaatgcttagccaatccctatttgattgaattgaaagaggtttgtt                                   >  1:70906‑M1/1‑35 (MQ=255)                                                                                                               aaTTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaa                                 <  2:324695‑M1/143‑111 (MQ=255)                                                                                                                aTTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                                <  2:480973‑M1/143‑112 (MQ=255)                                                                                                                aTTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaaataaaagatgattgttaag                                >  1:164254‑M1/1‑32 (MQ=255)                                                                                                                  tCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaagac                              >  1:567280‑M1/1‑30 (MQ=255)                                                                                                                    cACTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcat                            <  2:69736‑M1/143‑116 (MQ=255)                                                                                                                     aCTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatg                           >  1:234984‑M1/1‑27 (MQ=255)                                                                                                                     aCTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatg                           <  2:835628‑M1/143‑117 (MQ=255)                                                                                                                      cTGCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatgg                          <  1:1020237‑M1/143‑118 (MQ=255)                                                                                                                        gcgtttggtAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcggaaaagatagacatgcttggccgatctctatttgatggaattgaaagatgtttgttaaggcatggat                        <  2:1189814‑M1/140‑120 (MQ=255)                                                                                                                        gCCTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggat                        <  1:905768‑M1/143‑120 (MQ=255)                                                                                                                        accaaaggcagtggaaagcg‑ctaaataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggat                        <  1:184496‑M1/131‑120 (MQ=255)                                                                                                                         ccTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaacagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatg                       >  2:577682‑M1/1‑23 (MQ=255)                                                                                                                         ccTTTGGTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaacgatgtttgttaaggcatggctg                       >  1:1121654‑M1/1‑23 (MQ=255)                                                                                                                              ggTAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagc                  <  2:740660‑M1/143‑126 (MQ=255)                                                                                                                                tAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagcta                >  2:589625‑M1/1‑16 (MQ=255)                                                                                                                                tAGAGGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagacaatctgtatttgattgaattgagagatgtttgttaaggcatggatgagagcta                >  1:1047843‑M1/1‑16 (MQ=255)                                                                                                                                 agagGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctat               <  2:805472‑M1/143‑129 (MQ=255)                                                                                                                                  gagGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctata              >  1:848225‑M1/1‑14 (MQ=255)                                                                                                                                   agGAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatag             >  1:1112254‑M1/1‑13 (MQ=255)                                                                                                                                     gAAAGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagat           >  2:793927‑M1/1‑11 (MQ=255)                                                                                                                                      aaaGTG‑CTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagatt          >  2:190868‑M1/1‑10 (MQ=255)                                                                                                                                           ggccaaagaataatcaattgttaaattattctgcacttcactactggaactttaatccgagaagttggacctgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctga      <  1:442141‑M1/139‑138 (MQ=255)                                                                                                                                              tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatac   >  2:115368‑M1/1‑3 (MQ=255)                                                                                                                                               aaataataatggattgttaaagtatggtggatttgactagtggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacg  <  1:970216‑M1/143‑142 (MQ=255)                                                                                                                                                |                                                                                                                                              AAATTACAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTG‑CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCT  >  NC_000913/1299356‑1299639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑