New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 458787 =3 (0.040)49 (0.730) 36/278 1.0 94.3% intergenic (+87/‑101) clpX/lon ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La
?NC_000913 608011 = NA (NA)intergenic (+23/‑54) hokE/insL1 toxic polypeptide, small/IS186 transposase

GCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/458930‑458787
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC  >  NC_000913/608011‑608135
                                                                                                                                                                                                                                                                             
GCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCC                                                                                                                                <  1:1149467/143‑1
GCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCC                                                                                                                                <  2:789992/143‑1
 CAAGACGGGGATTGCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC                                                                                                                               <  2:50142/143‑1
             TTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAAC                                                                                                                   >  1:877287/1‑143
                AATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC                                                                                                                               <  2:883406/128‑1
                AATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC                                                                                                                               >  1:883406/1‑128
                  TGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGGTGTTTCCCCATAAGCGCTAACTTAAG                                                                                                              >  1:640662/1‑143
                   GCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTGAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGTATGTTTCCCCATAAGCGCTAACTTAAGG                                                                                                             <  1:202981/143‑1
                      TTCACAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTT                                                                                                          <  1:78210/143‑1
                        CAGAACGCTCAGGAGTCAGAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGT                                                                                                        <  1:1090692/143‑1
                         cgaaccgTCAGTATTCATAGATCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACTCCATCTATTAACATTTACGTCAGTATATGGGTATGTTTCCCCATAAGCGCTAACTTAATGGTTGTG                                                                                                       <  1:367736/136‑1
                                TCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTATGTCAGTATATGGGGAGGTTTTCCCATAAGCTCTATCTTGAGGCGTGTTGTATTtg                                                                                                >  1:337204/1‑141
                                TCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC                                                                                                >  1:966383/1‑143
                                TCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAAGGTTGTGTTGTTAC                                                                                                >  2:1017489/1‑143
                                   GGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTCACATGTACGTCAGTATATGGGGAGGTTTCGCCATACGCGCAAGCTTACGGGATGCGGTATTCCGCC                                                                                             >  1:474121/1‑143
                                     ATTCAGAGAGCTCTCACTTAGTTTAATTTCCGCCGGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTG                                                                                           <  1:448791/143‑1
                                         cTAGAGCTTGCTCTTAGTGTAATTTCCGCCAGTGAATCAGATGACACGACTGTGCTTCACGCCAGCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGTGTTGTGGTATTACGCCTGATAT                                                                                       <  2:1034990/142‑1
                                         ATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATAT                                                                                       >  1:221534/1‑143
                                             AGCTCTCTCTTAGGTTAATTTCCCCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATT                                                                                   <  2:363051/143‑1
                                                gCTCTCTTAGGTTACTGTCCGCCAGGCAATCAGTGGGCACGACTCTGCTCCACGCCATCTATTGACATGTCCGTCCGTATATGGGGATGTTTCCCCATAAGCGCTAACTGAAGGGTTGTGGTATTACGCCTGATATGATTTAA                                                                                <  1:294140/142‑1
                                                  TCTCTTAGTTTAATTTCCGCCAGGTAATAAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCGCATAAGCGCTAACTTAAGGGATGCGGTATTACACCTGATATAGTTTAAgc                                                                              >  2:1047826/1‑141
                                                             AATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATCTGGGGATGTTTCCCCATAAGCGCTAACCTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGCAT                                                                   >  2:533837/1‑143
                                                               TTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGAAGTTTCCCCATGAGCGCTAACTTAAGGGGTGTGGTGATACCCCTGATACGAATAAAAGTGCCaagtaatga                                                                 >  2:291586/1‑134
                                                               TTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGAGGCTGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGTGATTAGACAGGATAGGATTAAACATGCCGATGgaaga                                                                 >  2:315676/1‑138
                                                                      CAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGGTGTTTCCCCATAAGCGCTAACGTAAGGGTTGGGGTATTACGCCTGATATGATTTAACGTGACGATGAACTGCTCTCAC                                                          >  2:557619/1‑143
                                                                      CAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC                                                          <  1:616018/143‑1
                                                                       AGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACG                                                         >  1:941777/1‑143
                                                                                GATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGT                                                >  1:1152273/1‑143
                                                                                      ACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCCCGATAACTGGTCAGCAA                                          >  2:505321/1‑143
                                                                                      ACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGCGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAA                                          >  2:1072824/1‑143
                                                                                           TGTGCTTCATGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTG                                     >  2:222657/1‑143
                                                                                           TGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGCTGAATTACTCTCACGATAACTGGTCCGCAATTCTG                                     >  1:1035552/1‑143
                                                                                            GTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGG                                    >  1:509955/1‑143
                                                                                             TGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                   <  1:163204/143‑1
                                                                                             TGCTTCACGCCATCTATTAACATGTACGGCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                   <  2:665264/143‑1
                                                                                              GCTTCCCGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCC                                  <  2:641826/143‑1
                                                                                              GCTTCACGCCGTCTATTAACAGGTACGTCAGTATATGGGTATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCC                                  <  1:907936/143‑1
                                                                                                TTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGCGGTATTACGCCTGATATGATTCAACGTCCCGATGAATTCCTCTCCCGGTACCCGGTCAGacatcctccccca                                >  2:234353/1‑130
                                                                                                   ACGCCATCTATTAACATGTACGGCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGAGAACTGGTCAGCAATTCTGGCCCATAT                             <  1:777895/143‑1
                                                                                                    CGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATT                            >  1:596105/1‑143
                                                                                                      CCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATACGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAGTACTCCCACGATAACTGGTCAGCAATTCTGACCCACATTGG                          >  2:385864/1‑143
                                                                                                      CCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATACTGG                          >  2:840834/1‑143
                                                                                                        atctgtcgtCATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTA                        <  2:182535/134‑1
                                                                                                        ATCTATTAACATGTACGTCAGTATATGGGGATGTTTGCCCATAAGCGCTAACTTAGGGGTTGTGGTATTACGCCTTATATGATTTAACGTCCCGATTAATTGCTCTCACGAAAACTGGACAGCAATTCTGGCCCAcgtcggta                        >  2:21637/1‑135
                                                                                                            ATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCCGATCTGCATTTACATGCCGATGAATTACTCTCACGATAACTGGTCCGCAATTCTGGCCCATATCGGTACGCC                    >  2:1039345/1‑143
                                                                                                            ATTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGATGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCAGGCCAATATTctgaagcc                    >  2:407833/1‑135
                                                                                                             TTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCACTTCTGGCCCATATTGGTAAGCCC                   >  1:421163/1‑143
                                                                                                             TTAACATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCC                   >  2:558733/1‑143
                                                                                                                ACATGTACGTCAGTATATGGGGGTGTTTCCCCATAAGCCCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAA                <  1:931717/143‑1
                                                                                                                ACATGTACGTCAGTATATGGGGCTGTTTCCCCATAAGCGCTCACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCTGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGGCCATATTTGTATGCGCGAA                >  2:395684/1‑143
                                                                                                                ACATGTACGGCAGTATGTGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTACCGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAA                <  2:625136/143‑1
                                                                                                                  ATGTACGTCAGTATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGGAGA              >  1:1026242/1‑143
                                                                                                                             TATATGGGGATGTTTCCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATCTGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTAGTACGCCCGAAGAACTGGctcctc   >  2:631698/1‑137
                                                                                                                              ggcgcggggagtgcCCCGATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTACCGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC  <  1:632974/129‑1
                                                                                                                                                                                                                                                                             
GCAATACGGGGATTTCAATGCGTTCAGAACGCTCAGGATTCATAGAGCTCTCTCTTAGTTTAATTTCCGCCAGGTAATCAGATGACACGACTGTGCTTCACGCCATCTATTAACATGTACGTCAGTATATGGGGATGTTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/458930‑458787
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC  >  NC_000913/608011‑608135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.