mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 225281 | NA (NA) | 10 (0.150) | 8/274 | 7.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 274620 = | NA (NA) | 6 (0.090) | 6/266 | 8.1 | NA | coding (498/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | 274663 = | NA (NA) | coding (455/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 899793 | NA (NA) | 3 (0.060) +35 bp |
3/214 | 8.5 | 5.5% | noncoding (98/98 nt) | RIP82 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP82 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 1691484 = | 68 (0.990) | noncoding (60/97 nt) | RIP126 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP126 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 3792763 | 88 (1.280) | 4 (0.060) | 4/262 | 9.2 | 4.7% | intergenic (‑213/+62) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown |
| ? | NC_000913 | = 3792767 | 82 (1.290) | intergenic (‑217/+58) | kbl/yibB | glycine C‑acetyltransferase/YibB family protein, function unknown | |||||
| * | ? | NC_000913 | = 4426416 | 77 (1.120) | 4 (0.060) | 4/272 | 9.5 | 4.9% | coding (308/450 nt) | rplI | 50S ribosomal subunit protein L9 |
| ? | NC_000913 | = 4426511 | 83 (1.260) | coding (403/450 nt) | rplI | 50S ribosomal subunit protein L9 | |||||
| * | ? | NC_000913 | = 3944977 | NA (NA) | 6 (0.090) | 4/272 | 9.5 | 23.9% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4038810 | 20 (0.290) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 2727889 = | NA (NA) | 6 (0.090) | 4/272 | 9.5 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | = 227052 | 41 (0.600) | 6 (0.090) | 4/272 | 9.5 | 13.3% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2727908 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913 | 1997426 = | 61 (0.890) | 4 (0.060) | 4/276 | 9.6 | 6.1% | coding (389/753 nt) | yecC | putative ABC transporter ATPase |
| ? | NC_000913 | 1997455 = | 64 (0.960) | coding (360/753 nt) | yecC | putative ABC transporter ATPase | |||||
| * | ? | NC_000913 | 4295852 = | NA (NA) | 10 (0.150) +TT |
4/280 | 9.7 | NA | noncoding (19/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites |
| ? | NC_000913 | = 4296414 | NA (NA) | noncoding (581/602 nt) | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element, contains 11 REP sequences and 4 IHF sites | |||||