New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2443832	NA (NA)	5 (0.090)	5/282	7.9	NA	noncoding (46/80 nt)	REP171 (repetitive extragenic palindromic) element, contains 2 REP sequences	REP171 (repetitive extragenic palindromic) element, contains 2 REP sequences
	?	NC_000913	= 2443867	NA (NA)					intergenic (+99/+22)	mnmC/yfcL	fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.

GGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2443719‑2443832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGT  <  NC_000913/2443867‑2443826                                                                                                                                                              GGTTATGGGTGCGGAAATTGTGGAAGGGTGAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATGCGACCCTTATCGCGTCTTAT               <  1:856500/143‑1  GTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATGCGACGCTTATCGCGTCTTATC              <  2:834372/143‑1           GCGGAAATTGTCGTAGGGTAAGGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCCACCTACGTTTGACGCGTATGCCTGATGTGACGCTTATCGCGTCTTATCAGGCCTACA     <  1:411254/143‑1                                               GTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGT  >  1:350326/1‑110                                               GTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTATGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGT  <  2:350326/110‑1                                                                                                                                                              GGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2443719‑2443832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTGCCTGATGCGACGCTTATCGCGTCTTATCAGGCCTACACGT  <  NC_000913/2443867‑2443826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.