New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2443832	NA (NA)	5 (0.090)	5/282	7.9	NA	noncoding (46/80 nt)	REP171 (repetitive extragenic palindromic) element, contains 2 REP sequences	REP171 (repetitive extragenic palindromic) element, contains 2 REP sequences
	?	NC_000913	= 2443867	NA (NA)					intergenic (+99/+22)	mnmC/yfcL	fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.

AGTACGCTGGCGGCGTTAAACCCGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACC  >  NC_000913/2443691‑2443972                                                                                                                                              |                                                                                                                                             aggaCGCGGGCGGCGTTAAACCCGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAg                                                                                                                                             <  1:936124/140‑1 (MQ=255)     cGCTGGCGGCGTTAAACCCGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCt                                                                                                                                         <  2:728658/143‑1 (MQ=255)             gcgTTAAACCCGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAc                                                                                                                                 <  2:551987/143‑1 (MQ=255)               gTTAAACCCGCATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGAcgc                                                                                                                               <  1:622651/143‑1 (MQ=255)                 tAAACCCGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGa                                                                                                                             <  2:596251/143‑1 (MQ=255)                  aaaCCCGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTCAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATAGGGCTGACGGGTGGCGTGTAGGCCTGATAAGACGCGAt                                                                                                                            >  2:184857/1‑143 (MQ=255)                   aaCCCGAATCGGTGATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATa                                                                                                                           <  1:611875/143‑1 (MQ=255)                    aCCCGAATCGGTTATGGGTGCGGAAGTGGTTGGAGGGTAAAGCGGTTAAGGCGGGGGAATCTGGTCTCGGAGTGTTTGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTAGGTGTGGCGTGTAGGCCTGATAGGACGCGGTaa                                                                                                                          >  2:204300/1‑143 (MQ=37)                      ccGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGc                                                                                                                        >  2:914631/1‑143 (MQ=255)                      ccGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGGTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATACGACGCGATAAGc                                                                                                                        >  2:486385/1‑143 (MQ=255)                        gactCGGGTACGGGTGCGGAAGTTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGt                                                                                                                      <  1:648154/140‑1 (MQ=255)                          aTCGGTTAGGGGGGCGGAAATTGTGGAAGGGTAAAGCGGGTAAGGAGGGGTAATCTGCGCTCGCAGTGTTTGCCGGAGGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCg                                                                                                                    <  2:229015/143‑1 (MQ=255)                           tCGGTTGTGGGTGCGGAAATTGTTGAAGGGTACAGCGGCTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGc                                                                                                                   <  1:544644/143‑1 (MQ=255)                           gcGGTGATGGGGGCCGAAATGGTTGAAGGGTAAAGCGGTCAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGc                                                                                                                   <  1:300342/142‑1 (MQ=39)                            cGGTTATGGGTGCGGAAAGTGTTGAAGGGTAGAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCa                                                                                                                  <  1:915342/143‑1 (MQ=255)                             ggTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCAt                                                                                                                 >  2:889531/1‑143 (MQ=255)                              gTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGGCGCATc                                                                                                                >  2:243237/1‑143 (MQ=255)                                   gggTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCa                                                                                                           <  1:670865/143‑1 (MQ=255)                                      tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgc                                                                                                        >  1:282258/1‑143 (MQ=255)                                      tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGAGCAGCGTCGGCTCAGTGAtgc                                                                                                        >  2:399667/1‑143 (MQ=38)                                        cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTCGGACCGATTGGACGCGATAAGCGTCGCATCAGGCAtgcgg                                                                                                      >  2:686935/1‑141 (MQ=39)                                         ggAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgctgc                                                                                                     <  2:955031/143‑1 (MQ=255)                                             actgttgAAGCGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCa                                                                                                 <  2:29255/141‑1 (MQ=255)                                               tgttgAAGGGGAAGGCGGTGAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGa                                                                                               <  1:330826/143‑1 (MQ=255)                                                gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGGACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAc                                                                                              >  1:589114/1‑143 (MQ=255)                                                 tggacgggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcg                                                                                             <  1:943301/138‑1 (MQ=255)                                                   gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCCGAcgcc                                                                                           >  2:101539/1‑143 (MQ=255)                                                     aGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc                                                                                         <  2:667185/143‑1 (MQ=255)                                                            aGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTAc                                                                                  <  2:724086/143‑1 (MQ=255)                                                            aGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGCGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGCCGCCGCAACTTAc                                                                                  >  1:334243/1‑143 (MQ=255)                                                              cGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg                                                                                <  2:510427/143‑1 (MQ=255)                                                                  gaaGGCGGGTGAGTCTGTCCTCGCGGCGTTTGCCGGATGCGGCGTGTACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCGGCTCCAGACGCCGCAACTTACTGCtgt                                                                            <  1:98938/142‑1 (MQ=37)                                                                               tCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGGCGCGATAGGCGTCGCATCAGGAATAAATCGTTAGCCTCTGCAACTTACTGCTGTGACGCCGGCTGaa                                                               >  2:421458/1‑143 (MQ=25)                                                                                 tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCACCTTACTGCTGTAACGCctgctgcacc                                                             >  1:460705/1‑139 (MQ=255)                                                                                 tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGCCGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCCGCGCCGCCCGCAGCAAc                                                             >  1:543411/1‑143 (MQ=38)                                                                                  gCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAcc                                                            >  2:350588/1‑142 (MQ=255)                                                                                   ctgtctgaGTGTTGGGGGGATGGGGGGTGGACGCCTTATCCGACAAGGTTAAAACGTGGAGGGTTGACAACACGCGATAAGCGTCGCATCAGGCATGCGGCTCCAGCCGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg                                                           <  1:448846/136‑1 (MQ=255)                                                                                   ctctCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATACGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg                                                           <  1:640878/143‑1 (MQ=255)                                                                                    tctcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGCAACggg                                                          >  1:585521/1‑143 (MQ=255)                                                                                    tctcGCAGTGTTTGCCGGACGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAgg                                                          <  1:488784/143‑1 (MQ=255)                                                                                        gCAGTGTTTGCCGGATGCGGCGTGAACGCCTCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATACGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGtttt                                                      <  2:273346/143‑1 (MQ=255)                                                                                          aGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc                                                    <  1:680481/143‑1 (MQ=255)                                                                                          aGTGGTTGCCGGATGCGGCGTGAACGCCTGATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGGAGCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc                                                    <  1:417359/143‑1 (MQ=255)                                                                                              tgtGCCTGATGCGGCGTGAACGCCTTATCCGACCTACGTGGGCGGTGTAGGCCTGATCAGACGAGATAAGAATGACAACAGGCATGCTGTTCCAGTCGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca                                                <  1:884930/141‑1 (MQ=255)                                                                                               ttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACat                                               >  2:676033/1‑143 (MQ=255)                                                                                                          ggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCAGCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGGGCCGCCTGCTGAAACAGGTATGCCCACATATCGGTCACCa                                    >  1:743389/1‑143 (MQ=39)                                                                                                              ggaccGCCTTATCCGCCCTACGTGTGACGTGTAGGCATGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCCGACGCCGCAACTTACTACTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAgcgc                                <  2:525661/139‑1 (MQ=39)                                                                                                                 cggatgggtCCGACCTACGTGTGACGTGTAGGTCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGCCGCCGGCTGAAAAAGGTTTTCCCACATATCGGTCACCAGCGCCTg                             <  1:772491/135‑1 (MQ=255)                                                                                                                     cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGCCGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCa                         >  2:736808/1‑143 (MQ=255)                                                                                                                      ttATCCGACCTTCGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCTCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAc                        <  1:626515/143‑1 (MQ=255)                                                                                                                      ttATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTACAGATGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAc                        >  2:378961/1‑143 (MQ=255)                                                                                                                       tATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAcg                       <  2:946309/143‑1 (MQ=255)                                                                                                                           cGACCTATGTGTTACGTGTAGTCCTGATAAGACGCGATACGTGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACACCTGCTGAAACAGGTTTTCCAACATATCGGTCACCAGCGCCTGGTCACgcggc                   <  1:180435/143‑1 (MQ=255)                                                                                                                           cGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGTTTTTAGGCCTGCTGTAACAGGTTTTACCACGTATCGGTCCCCCGCCCCTGGTCAcggcgc                   >  1:249806/1‑139 (MQ=37)                                                                                                                           cGACCTACGGGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcggc                   <  1:704259/143‑1 (MQ=255)                                                                                                                            gACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcggcg                  >  2:540235/1‑143 (MQ=255)                                                                                                                                    tgggACGTGTACGCCTGATAAGACGCGATAAGCGTCGCGTCAGGCATGCTGCGCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCa          <  1:610298/140‑1 (MQ=255)                                                                                                                                     gtcaCGTGTAGGCCTGCTAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCAc         <  2:725402/140‑1 (MQ=255)                                                                                                                                      tgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCAGCAGCGCCAGGTCACGCGGAGACAATTCAcc        >  2:105179/1‑143 (MQ=255)                                                                                                                                      tgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATAGCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCAcc        <  2:695990/143‑1 (MQ=255)                                                                                                                                          gtgtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGGGACGCCGGCTGAAACAGGTTTTCCCACAAACGGGACACCAGCGCCTGGTCACGCGGCGAGAATTGACCAGCa    >  2:200426/1‑143 (MQ=38)                                                                                                                                            gtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCCCCAGCGCCTGGTCACGCGGCCACCATTCACCCGCAcc  >  2:979586/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                             AGTACGCTGGCGGCGTTAAACCCGAATCGGTTATGGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACCAGCACC  >  NC_000913/2443691‑2443972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.