| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2443832 | NA (NA) | 5 (0.090) | 5/282 | 7.9 | NA | noncoding (46/80 nt) | REP171 (repetitive extragenic palindromic) element, contains 2 REP sequences | REP171 (repetitive extragenic palindromic) element, contains 2 REP sequences |
| ? | NC_000913 | = 2443867 | NA (NA) | intergenic (+99/+22) | mnmC/yfcL | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme/uncharacterized protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGTAT > NC_000913/2443725‑2444007 | gggTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCa < 1:670865/143‑1 (MQ=255) tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgc > 1:282258/1‑143 (MQ=255) tGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGAGCAGCGTCGGCTCAGTGAtgc > 2:399667/1‑143 (MQ=38) cGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTCGGACCGATTGGACGCGATAAGCGTCGCATCAGGCAtgcgg > 2:686935/1‑141 (MQ=39) ggAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCAtgctgc < 2:955031/143‑1 (MQ=255) actgttgAAGCGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCa < 2:29255/141‑1 (MQ=255) tgttgAAGGGGAAGGCGGTGAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGa < 1:330826/143‑1 (MQ=255) gttgAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGGACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAc > 1:589114/1‑143 (MQ=255) tggacgggTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcg < 1:943301/138‑1 (MQ=255) gAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCCGAcgcc > 2:101539/1‑143 (MQ=255) aGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGAcgccgc < 2:667185/143‑1 (MQ=255) aGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTAc < 2:724086/143‑1 (MQ=255) aGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGCGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGCCGCCGCAACTTAc > 1:334243/1‑143 (MQ=255) cGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTActg < 2:510427/143‑1 (MQ=255) gaaGGCGGGTGAGTCTGTCCTCGCGGCGTTTGCCGGATGCGGCGTGTACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCGGCTCCAGACGCCGCAACTTACTGCtgt < 1:98938/142‑1 (MQ=37) tCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGGCGCGATAGGCGTCGCATCAGGAATAAATCGTTAGCCTCTGCAACTTACTGCTGTGACGCCGGCTGaa > 2:421458/1‑143 (MQ=25) tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCACCTTACTGCTGTAACGCctgctgcacc > 1:460705/1‑139 (MQ=255) tGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGCCGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCCGCGCCGCCCGCAGCAAc > 1:543411/1‑143 (MQ=38) gCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAAcc > 2:350588/1‑142 (MQ=255) ctgtctgaGTGTTGGGGGGATGGGGGGTGGACGCCTTATCCGACAAGGTTAAAACGTGGAGGGTTGACAACACGCGATAAGCGTCGCATCAGGCATGCGGCTCCAGCCGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg < 1:448846/136‑1 (MQ=255) ctctCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATACGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAg < 1:640878/143‑1 (MQ=255) tctcGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGCAACggg > 1:585521/1‑143 (MQ=255) tctcGCAGTGTTTGCCGGACGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAgg < 1:488784/143‑1 (MQ=255) gCAGTGTTTGCCGGATGCGGCGTGAACGCCTCATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATACGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGtttt < 2:273346/143‑1 (MQ=255) aGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc < 1:680481/143‑1 (MQ=255) aGTGGTTGCCGGATGCGGCGTGAACGCCTGATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGGAGCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTcc < 1:417359/143‑1 (MQ=255) tgtGCCTGATGCGGCGTGAACGCCTTATCCGACCTACGTGGGCGGTGTAGGCCTGATCAGACGAGATAAGAATGACAACAGGCATGCTGTTCCAGTCGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCcaca < 1:884930/141‑1 (MQ=255) ttGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACat > 2:676033/1‑143 (MQ=255) ggcgTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCAGCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGGGCCGCCTGCTGAAACAGGTATGCCCACATATCGGTCACCa > 1:743389/1‑143 (MQ=39) ggaccGCCTTATCCGCCCTACGTGTGACGTGTAGGCATGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCCGACGCCGCAACTTACTACTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAgcgc < 2:525661/139‑1 (MQ=39) cggatgggtCCGACCTACGTGTGACGTGTAGGTCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGCCGCCGGCTGAAAAAGGTTTTCCCACATATCGGTCACCAGCGCCTg < 1:772491/135‑1 (MQ=255) cTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGCCGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCa > 2:736808/1‑143 (MQ=255) ttATCCGACCTTCGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCTCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAc < 1:626515/143‑1 (MQ=255) ttATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTACAGATGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAc > 2:378961/1‑143 (MQ=255) tATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCAcg < 2:946309/143‑1 (MQ=255) cGACCTATGTGTTACGTGTAGTCCTGATAAGACGCGATACGTGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACACCTGCTGAAACAGGTTTTCCAACATATCGGTCACCAGCGCCTGGTCACgcggc < 1:180435/143‑1 (MQ=255) cGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGTTTTTAGGCCTGCTGTAACAGGTTTTACCACGTATCGGTCCCCCGCCCCTGGTCAcggcgc > 1:249806/1‑139 (MQ=37) cGACCTACGGGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcggc < 1:704259/143‑1 (MQ=255) gACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACgcggcg > 2:540235/1‑143 (MQ=255) tgggACGTGTACGCCTGATAAGACGCGATAAGCGTCGCGTCAGGCATGCTGCGCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCa < 1:610298/140‑1 (MQ=255) gtcaCGTGTAGGCCTGCTAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCAc < 2:725402/140‑1 (MQ=255) tgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCAGCAGCGCCAGGTCACGCGGAGACAATTCAcc > 2:105179/1‑143 (MQ=255) tgACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATAGCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCAcc < 2:695990/143‑1 (MQ=255) gtgtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGGGACGCCGGCTGAAACAGGTTTTCCCACAAACGGGACACCAGCGCCTGGTCACGCGGCGAGAATTGACC‑AGCa > 2:200426/1‑143 (MQ=38) gtAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCCCCAGCGCCTGGTCACGCGGCCACCATTCACC‑CGCAcc > 2:979586/1‑143 (MQ=255) ggCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAAt < 1:889531/143‑1 (MQ=255) ggATAAGACGCGATACGCGTCGCACCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCt < 1:101539/142‑1 (MQ=255) aCGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAGCTTCATACGCCCACCCCTGCTGAGGCCCCTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCa < 1:449490/143‑1 (MQ=255) aCGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGTCGCCTGCTGAACCAGGGTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCACTGGCTTTTTGCa > 1:214841/1‑143 (MQ=255) gATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑GGCCCCACTGGCTGTTTCCAGCct > 2:784628/1‑143 (MQ=255) aGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTgg > 1:773125/1‑143 (MQ=255) gCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGc < 1:686935/143‑1 (MQ=255) aGGCATGCTGCTCCAGACGCCGCACCCTACTGCTGTGACGCCTCCCGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGTTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGt < 1:505423/143‑1 (MQ=255) gCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGTAt < 2:520562/143‑1 (MQ=255) gCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTCCCCACATATCGGTCACCCGCACCTGGACCCGCGGCGCCAAGTCACCGAGC‑CCAATCGCCGTTTCCAGACTCTGACTAAAGGGCGTaa > 1:747796/1‑142 (MQ=255) | GGGTGCGGAAATTGTTGAAGGGTAAAGCGGTTAAGGCGGGGTAATCTGCTCTCGCAGTGTTTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGTGTGACGTGTAGGCCTGATAAGACGCGATAAGCGTCGCATCAGGCATGCTGCTCCAGACGCCGCAACTTACTGCTGTGACGCCTGCTGAAACAGGTTTTCCCACATATCGGTCACCAGCGCCTGGTCACGCGGCGACAATTCACC‑AGCACCAATGGCTTTTTCCAGACTCTGGCTAACGGTCGTAT > NC_000913/2443725‑2444007 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |