New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12078058 (0.120)41 (0.700) 33/252 0.9 85.3% coding (305/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 = 1209602 7 (0.120)pseudogene (18/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

GGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1207656‑1207805
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGAT  <  NC_000913/1209602‑1209461
                                                                                                                                                                                                                                                                                                    
GGCGTCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG                                                                                                                                                       <  1:295587/143‑1
GGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGGAAACCTTGGctggg                                                                                                                                                       >  1:1080085/1‑138
 GCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG                                                                                                                                                      >  1:27347/1‑143
  ccgCCGGGGCCAGCCGGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGA                                                                                                                                                     <  2:221704/140‑1
     CCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTGTGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTCGTCTGGGAGAA                                                                                                                                                  >  2:988732/1‑143
      CGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGCTTGGGAGAAG                                                                                                                                                 >  1:18751/1‑143
              GCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGAGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATCTCAAATCGGATGGCACTGTGCACACGGCTCTCGAAGACCGTGGTCGGGGAGAAGGCTCTGCA                                                                                                                                         >  1:233267/1‑143
                    aggAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCT                                                                                                                                   >  1:847288/4‑143
                       AGGGCCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTGAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTT                                                                                                                                <  2:157333/143‑1
                        GGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTG                                                                                                                               <  2:45201/143‑1
                        GGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCCCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTG                                                                                                                               <  1:671253/143‑1
                              GCAGGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCC                                                                                                                         <  1:377231/143‑1
                                    CCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTC                                                                                                                   >  1:506679/1‑143
                                     CAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGCTCTGCAGTACCTGTTGGTGTCCCGGTGCC                                                                                                                  >  2:784544/1‑143
                                        TTATTTACCGCACTTCGCGCGCTGCTGTTACGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTG                                                                                                               <  2:556665/143‑1
                                           CTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGAATTAACTGATGGTATCACGGTTCCGTAGCC                                                                                                            >  2:202649/1‑143
                                            TTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCT                                                                                                           >  1:9094/1‑143
                                               CCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGCTATCAAATCGGATGGCACTGTGCAAACGGCTCTCGCAAACCTTGGTTTGGGAGACGGCTCTGCATTCCCTGTTGGTGTCCCGGTTCCGTGGCCTTCA                                                                                                        >  1:332981/1‑143
                                                 gcgctgccCGCGCTGCTGTTCATCCGCAAGAATCCGGCTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGC                                                                                                      <  2:30940/135‑1
                                                 gccgtgCGCGCGCTGCTGTTACACCGCAAGGCGCCGTTTTGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTCGTGTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGC                                                                                                      <  2:969432/137‑1
                                                   ACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCA                                                                                                    <  2:540356/143‑1
                                                     TTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACT                                                                                                  >  1:181496/1‑143
                                                           CGCTGCTGTTGAGCCGCTGGCATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCA                                                                                            <  2:1053494/143‑1
                                                                   TTAAGCCGTCAGTAGCTGTTTGTCGATATCAGAGCGGAGGGCACTGTGCAAACGGCTCTCGAGAGCCTTGGTGTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCTCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTG                                                                                    <  2:371295/143‑1
                                                                   TTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTG                                                                                    >  1:173386/1‑143
                                                                        CCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGA                                                                               >  1:971012/1‑143
                                                                               AATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAA                                                                        <  1:917524/143‑1
                                                                                  CCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGG                                                                     <  1:773436/143‑1
                                                                                        GGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGC                                                               <  2:559975/143‑1
                                                                                          CGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCT                                                                                                                                            <  2:321132/64‑1
                                                                                          CGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCT                                                                                                                                            >  1:321132/1‑64
                                                                                            ATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTCGTTTGGGAGAAGGCTCTGCATTACCTGCTGGTGTCCCGGCTCCGTGGCCTTCAGCCACCCCGCCCACAGGCTGACTGAAATGCCACGGTGCaccatgt                                                           >  2:782101/1‑136
                                                                                                 AAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGGGCCGCTTTTTCTGC                                                      >  1:574494/1‑143
                                                                                                  AATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTCTTCTGCT                                                     >  2:1149019/1‑143
                                                                                                       GATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG                                                                                                                                                      >  2:1150288/1‑41
                                                                                                       GATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG                                                                                                                                                      <  1:1150288/41‑1
                                                                                                         TGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATGACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCACCAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAAT                                              <  1:1109736/143‑1
                                                                                                           GCACTGTGCAAACGGCTCTCGAACACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATAC                                            <  1:721438/143‑1
                                                                                                            CACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACC                                           >  1:853124/1‑143
                                                                                                             ACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTTCGGCATTTGTCCTTCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCC                                          >  1:484762/1‑143
                                                                                                                  gctatCGGCTCTCGAAAACCTTGCTTTGGTAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTGCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAAC                                     <  2:587449/138‑1
                                                                                                                    AAAGGGCTCTCGAAACCCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCACCAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTG                                   <  1:235905/143‑1
                                                                                                                    AAACGGCTCTAGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTGGGTGTCCCGGTGCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTG                                   <  1:36564/143‑1
                                                                                                                         GCTCTCGAAAACCTTGGTGTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAA                              <  2:707893/143‑1
                                                                                                                           TCTCGAAAACCGTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCCGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGG                            <  2:847288/143‑1
                                                                                                                            CTCGAAAACCTTGGTTTCGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGGGGCCTTCAGCCACGCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGC                           <  1:169946/143‑1
                                                                                                                              CGAAAACCGTGGTTGGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTT                         <  2:794497/143‑1
                                                                                                                                 aagCCTTTGTTTGTCAGAGGTCTCTGCATTACCTCTCGGTGTCCCGGGTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGTTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATC                      <  2:556763/140‑1
                                                                                                                                     CTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTGAGCCACTGCGCCAACAGGCTGGCTGAAATGCAATGGTGCAGCTTTTTCTGCTGAAGAATGCCCGGAACTGGCAAAGGCTTATCCTAC                  >  2:308126/1‑143
                                                                                                                                      TTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCGGTCCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACA                 <  1:1034980/143‑1
                                                                                                                                             GGGAGAGGGCTCTGCTTTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAAT          <  2:1026562/143‑1
                                                                                                                                                   AGGCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTG    <  1:585268/143‑1
                                                                                                                                                     GCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAACTTGCCTGAT  >  2:1033723/1‑143
                                                                                                                                                                                                                                                                                                    
GGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1207656‑1207805
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGTCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGAT  <  NC_000913/1209602‑1209461

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.