New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	8 (0.120)	41 (0.700)	33/252	0.9	85.3%	coding (305/630 nt)	stfP	e14 prophage, uncharacterized protein
	?	NC_000913	= 1209602	7 (0.120)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related

ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAA  >  NC_000913/1209461‑1209738                                                                                                                                              |                                                                                                                                         aTCAGGCAAGTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc                                                                                                                                         >  2:1033723‑M2/1‑142 (MQ=255)   cAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct                                                                                                                                       <  1:585268‑M2/143‑4 (MQ=255)         atttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAAAGCAGAGccctctccc                                                                                                                                 <  2:1026562‑M2/143‑10 (MQ=255)                tGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGGACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaa                                                                                                                          <  1:1034980‑M2/143‑17 (MQ=255)                 gTAGGATAAGCCTTTGCCAGTTCCGGGCATTCTTCAGCAGAAAAAGCTGCACCATTGCATTTCAGCCAGCCTGTTGGCGCAGTGGCTCAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag                                                                                                                         >  2:308126‑M2/1‑126 (MQ=255)                     gATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAACCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGACCCGGGACACCGAGAGGTAATGCAGAGacctctgacaaacaaaggctt                                                                                                                     <  2:556763‑M2/143‑22 (MQ=255)                        aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctccccaaccacggttttcg                                                                                                                  <  2:794497‑M2/143‑25 (MQ=255)                          gCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGCGTGGCTGAAGGCCCCGGAACCGGGACACCAACAGGTAATGCAGAGccttctccgaaaccaaggttttcgag                                                                                                                <  1:169946‑M2/143‑27 (MQ=255)                           ccTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCGGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccacggttttcgaga                                                                                                               <  2:847288‑M2/143‑28 (MQ=255)                             tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccacaccaaggttttcgagagc                                                                                                             <  2:707893‑M2/143‑30 (MQ=255)                                  cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGCACCGGGACACCCACAGGTAATGCAGAGccttctcccaaaccaaggttttctagagccgttt                                                                                                        <  1:36564‑M2/143‑35 (MQ=255)                                  cAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcgagagcccttt                                                                                                        <  1:235905‑M2/143‑35 (MQ=255)                                    gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGCAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctaccaaagcaaggttttcgagagccgatagc                                                                                                      <  2:587449‑M2/143‑37 (MQ=255)                                         gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGAAGGACAAATGCCGAAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagt                                                                                                 >  1:484762‑M2/1‑102 (MQ=255)                                          ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtg                                                                                                >  1:853124‑M2/1‑101 (MQ=255)                                           gTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggtgttcgagagccgtttgcacagtgc                                                                                               <  1:721438‑M2/143‑44 (MQ=255)                                             aTTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGccttctcccaaaccaaggttttcgagcgccgtttgcacagtgcca                                                                                             <  1:1109736‑M2/143‑46 (MQ=255)                                                    agcagAAGAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt                                                                                      >  2:1149019‑M2/1‑91 (MQ=255)                                                     gcagAAAAAGCGGCCCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgattt                                                                                     >  1:574494‑M2/1‑90 (MQ=255)                                                          acatggtgcaccgtgGCATTTCAGTCAGCCTGTGGGCGGGGTGGCTGAAGGCCACGGAGCCGGGACACCAGCAGGTAATGCAGAGccttctcccaaacgaagggtttcgagagccgtttgcacagtgccatccgatttgatat                                                                                >  2:782101‑M2/8‑85 (MQ=255)                                                              gCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcc                                                                            <  2:559975‑M2/143‑63 (MQ=255)                                                                    ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacgg                                                                      <  1:773436‑M2/143‑69 (MQ=255)                                                                       ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatt                                                                   <  1:917524‑M2/143‑72 (MQ=255)                                                                             ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                             >  1:962954/1‑143 (MQ=255)                                                                              tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcgg                                                            >  1:971012‑M2/1‑65 (MQ=255)                                                                                   cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaa                                                       >  1:173386‑M2/1‑60 (MQ=255)                                                                                   cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGAGACACCAACAGGTAATGCAGAGccttctcccacaccaaggctctcgagagccgtttgcacagtgccctccgctctgatatcgacaaacagctactgacggcttaa                                                       <  2:371295‑M2/143‑84 (MQ=255)                                                                                     gccTGTTGGCGGAGTGGCTGAAGGCGACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAGAAGGGGGCTTTAACagg                                                     >  2:548874/1‑141 (MQ=255)                                                                                           tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccacaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggatgccagcggctcaacagcagcg                                               <  2:1053494‑M2/143‑92 (MQ=255)                                                                                                 aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaa                                         >  1:181496‑M2/1‑46 (MQ=255)                                                                                                   tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagt                                       <  2:540356‑M2/143‑100 (MQ=255)                                                                                                     gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccacacgaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgcaaaacggcgccttgcggtgtaacagcagcgcgcgcacggc                                     <  2:969432‑M2/143‑102 (MQ=255)                                                                                                     gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgctatcgccagccggattcttgcggatgaacagcagcgcgggcagcgc                                     <  2:30940‑M2/143‑102 (MQ=255)                                                                                                       tGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCttgttgcgcgtgtgcgc                                   >  1:322556/1‑132 (MQ=255)                                                                                                       tGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGccgtctcccaaaccaaggtttgcgagagccgtttgcacagtgccatccgatttgatagcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg                                   >  1:332981‑M2/1‑40 (MQ=255)                                                                                                          aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                >  1:9094‑M2/1‑37 (MQ=255)                                                                                                           ggCTACGGAACCGTGATACCATCAGTTAATTCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaag                               >  2:202649‑M2/1‑36 (MQ=255)                                                                                                           ggCCATGGAACCGGGACACCAAAAGGAAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt                               <  2:115576/143‑1 (MQ=255)                                                                                                              cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcgtaacagcagcgcgcgaagtgcggtaaataa                            <  2:556665‑M2/143‑111 (MQ=255)                                                                                                                 ggCACCGGGACACCAACAGGTACTGCAGAGccttctcccaatccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactg                         >  2:784544‑M2/1‑30 (MQ=255)                                                                                                                  gAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactgg                        >  1:506679‑M2/1‑29 (MQ=255)                                                                                                                    aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTTGCTATGTACGCGTATCAACAAATg                      >  2:323758/1‑143 (MQ=255)                                                                                                                        ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcctgc                  <  1:377231‑M2/143‑121 (MQ=255)                                                                                                                           cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa               <  1:637265/143‑1 (MQ=255)                                                                                                                              cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagggcgcgaagtgcggtaagtaactggtcgtgccgcccc            <  1:671253‑M2/143‑127 (MQ=255)                                                                                                                              cAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc            <  2:45201‑M2/143‑127 (MQ=255)                                                                                                                               aaCAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggctcaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccggccct           <  2:157333‑M2/143‑128 (MQ=255)                                                                                                                                aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAacatgg          >  1:72211/1‑140 (MQ=255)                                                                                                                                  aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccctcct        >  1:847288‑M2/1‑13 (MQ=255)                                                                                                                                        tGCAGAGccttctccccgaccacggtcttcgagagccgtgtgcacagtgccatccgatttgagatcgccaaacggattcttgcggcttaacagcagcgctcgaagtgcggtaagtaactggtcgtgccgccccttctccaggc  >  1:233267‑M2/1‑7 (MQ=255)                                                                                                                                           agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg                                                                              <  2:321132‑M2/64‑61 (MQ=255)                                                                                                                                           agagccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcg                                                                              >  1:321132‑M2/1‑4 (MQ=255)                                                                                                                                              |                                                                                                                                         ATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAA  >  NC_000913/1209461‑1209738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.