New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1651548NA (NA)50 (1.120) 43/284 0.1 96.2% intergenic (+11/‑3) insD1/intQ IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related
?NC_000913 = 1937140 2 (0.040)coding (489/870 nt) yebK putative DNA‑binding transcriptional regulator

CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1651408‑1651548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT  <  NC_000913/1937140‑1937003
                                                                                                                                                                                                                                                                                       
ccgTGCAGGGGCGTTCGAGCATTAGAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGg                                                                                                                                          <  1:544291/140‑2
      agagcaGTTCAAGCAGTAAGACCAATAGCATCCGCATAGTGCGCTGGGTTATTGCTCGCTACGGGAATATCTGCGGCAGCGGGCTTGTAAGGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAT                                                                                                                                    <  1:214557/137‑1
      AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAT                                                                                                                                    <  1:710732/143‑1
        AGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCG                                                                                                                                  <  2:610191/143‑1
          GCGTTCGGGGGTTGTGACGAGTGGCATGCGCACAGTGCGCGGGGTTATCGCCCGCCACGGGAAGATCTGCGGCAGCGGGGTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGA                                                                                                                                <  2:292802/143‑1
            GTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGATAAAGAGGGGCAAATCCAGATATCCTCGGAGT                                                                                                                              >  2:585722/1‑143
             TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTA                                                                                                                             >  1:98360/1‑143
              TCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTAC                                                                                                                            >  1:467353/1‑143
                      TATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGG                                                                                                                    >  2:552011/1‑143
                        TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAA                                                                                                                  <  1:46907/143‑1
                                GGCATCCTCCTAGCGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCTGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAA                                                                                                          <  2:139723/143‑1
                                   ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAACTCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGA                                                                                                       <  2:671036/143‑1
                                   ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGA                                                                                                       >  2:411597/1‑143
                                    TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCGGCGGGCTTGTAATGGGTTAAGTCATAACAGATGTCTGGAAATATAGGGGCAAATGCAGAGATCATCGGAGGACACCACCGGAACATgacagcgag                                                                                                      >  2:151287/1‑134
                                     CCGCATACTGCGCTGGGTTATCGCTCCCCACGGGAATATCTGCGGCACCGGGCTTCTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA                                                                                                     <  1:765861/143‑1
                                     CCGCACAGTGCGCTGGGTCATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA                                                                                                     <  1:51767/143‑1
                                        cacAGTGCGCTGCTTTCACCCTCGCCACCGTCATATCTGCGGCCGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGCAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCTGAACATTAAAACGAAAGAA                                                                                                  <  2:715590/140‑1
                                         ATAGTGCGCTGGGTTATCGCTGGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAGCGGAGTACACCACCGGAACATTAAAACGAAAGAAC                                                                                                 <  2:266458/143‑1
                                           AGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTT                                                                                               >  1:570931/1‑143
                                                         TCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGg                                                                                 >  1:448159/1‑142
                                                            CTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACNCCACCGGAACATAAAAACGAAAGAGCTCAACCATCGCATCGTGGG                                                                              >  2:268568/1‑143
                                                               GCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAGATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAAGTTATTCATCGCATCGTGGGGAA                                                                           >  1:287124/1‑143
                                                                 CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGACAGAACTTATTCATCGCATCGTGGGCAACG                                                                         >  1:515387/1‑143
                                                                 CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACG                                                                         <  1:441106/143‑1
                                                                    GGGAATATCTGCGGCAGCGGTCTTGTAATGGGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCG                                                                      <  2:429020/143‑1
                                                                     GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAGCATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGG                                                                     <  1:410481/143‑1
                                                                     GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGCAAGCACTTATTCATCGCATCGTGGGCAACGGCGG                                                                     <  2:683900/143‑1
                                                                     GGAATATCGGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGG                                                                     <  2:343839/143‑1
                                                                          agCTGCGGCAGCTGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAA                                                                <  2:528428/141‑1
                                                                           TCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAG                                                               >  2:118099/1‑143
                                                                            CTGCGGCATCGGGTCTGTAAGTTATTAAGTGATAACAGCTGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA                                                              <  2:599527/143‑1
                                                                            CTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA                                                              >  2:152152/1‑143
                                                                               CGGCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCC                                                           <  1:581143/143‑1
                                                                                    GCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGCGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATC                                                      <  1:409040/143‑1
                                                                                     caggatggaaaaGGGTGAAGAGATAACAGAAGCCTGGAAAGATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCC                                                     <  1:202775/131‑1
                                                                                         CTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGGAGAGCCTAATCCGAAA                                                 >  2:84083/1‑143
                                                                                           TGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAA                                               <  1:411597/143‑1
                                                                                            aTAATGGGTTAAGTGAAAACAGATGTCTGGAAATATAGGAGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAG                                              <  1:107718/142‑1
                                                                                                  GGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGGTT                                        >  1:454064/1‑143
                                                                                                        ggGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTT                                  <  1:220573/141‑1
                                                                                                        GTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAACAAGGCGATTTTTTTT                                  >  2:429740/1‑143
                                                                                                           ATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGAAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGGCTAATCCGAAAAAGGCGATTTTTTTTGCC                               >  2:693189/1‑143
                                                                                                            TAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGCTTTTTTTTtcat                              >  2:259741/1‑139
                                                                                                            TAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTCTTACGCCT                              >  2:783321/1‑143
                                                                                                                  ATGTCTCGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCTAAAAAGGCGATTTTTTTTGCCTGAGTGA                        <  2:65020/143‑1
                                                                                                                      CTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAACACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGGGAGCAA                    >  1:110893/1‑143
                                                                                                                                AGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCG          >  2:108665/1‑143
                                                                                                                                  GGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGATGGCGCG        >  1:780837/1‑143
                                                                                                                                   GGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCGGAGTGAGCGAGTCGGCGGgcccg       >  1:121942/1‑138
                                                                                                                                        ATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT  <  1:458238/143‑1
                                                                                                                                                                                                                                                                                       
CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1651408‑1651548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT  <  NC_000913/1937140‑1937003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.