| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1651548 | NA (NA) | 50 (1.120) | 43/284 | 0.1 | 96.2% | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related |
| ? | NC_000913 | = 1937140 | 2 (0.040) | coding (489/870 nt) | yebK | putative DNA‑binding transcriptional regulator | |||||
CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651408‑1651548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT < NC_000913/1937140‑1937003 ccgTGCAGGGGCGTTCGAGCATTAGAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGg < 1:544291/140‑2 agagcaGTTCAAGCAGTAAGACCAATAGCATCCGCATAGTGCGCTGGGTTATTGCTCGCTACGGGAATATCTGCGGCAGCGGGCTTGTAAGGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAT < 1:214557/137‑1 AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAT < 1:710732/143‑1 AGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCG < 2:610191/143‑1 GCGTTCGGGGGTTGTGACGAGTGGCATGCGCACAGTGCGCGGGGTTATCGCCCGCCACGGGAAGATCTGCGGCAGCGGGGTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGA < 2:292802/143‑1 GTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGATAAAGAGGGGCAAATCCAGATATCCTCGGAGT > 2:585722/1‑143 TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTA > 1:98360/1‑143 TCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTAC > 1:467353/1‑143 TATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGG > 2:552011/1‑143 TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAA < 1:46907/143‑1 GGCATCCTCCTAGCGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCTGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAA < 2:139723/143‑1 ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAACTCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGA < 2:671036/143‑1 ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGA > 2:411597/1‑143 TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCGGCGGGCTTGTAATGGGTTAAGTCATAACAGATGTCTGGAAATATAGGGGCAAATGCAGAGATCATCGGAGGACACCACCGGAACATgacagcgag > 2:151287/1‑134 CCGCATACTGCGCTGGGTTATCGCTCCCCACGGGAATATCTGCGGCACCGGGCTTCTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 1:765861/143‑1 CCGCACAGTGCGCTGGGTCATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 1:51767/143‑1 cacAGTGCGCTGCTTTCACCCTCGCCACCGTCATATCTGCGGCCGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGCAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCTGAACATTAAAACGAAAGAA < 2:715590/140‑1 ATAGTGCGCTGGGTTATCGCTGGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAGCGGAGTACACCACCGGAACATTAAAACGAAAGAAC < 2:266458/143‑1 AGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTT > 1:570931/1‑143 TCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGg > 1:448159/1‑142 CTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACNCCACCGGAACATAAAAACGAAAGAGCTCAACCATCGCATCGTGGG > 2:268568/1‑143 GCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAGATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAAGTTATTCATCGCATCGTGGGGAA > 1:287124/1‑143 CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGACAGAACTTATTCATCGCATCGTGGGCAACG > 1:515387/1‑143 CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACG < 1:441106/143‑1 GGGAATATCTGCGGCAGCGGTCTTGTAATGGGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCG < 2:429020/143‑1 GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAGCATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGG < 1:410481/143‑1 GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGCAAGCACTTATTCATCGCATCGTGGGCAACGGCGG < 2:683900/143‑1 GGAATATCGGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGG < 2:343839/143‑1 agCTGCGGCAGCTGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAA < 2:528428/141‑1 TCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAG > 2:118099/1‑143 CTGCGGCATCGGGTCTGTAAGTTATTAAGTGATAACAGCTGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA < 2:599527/143‑1 CTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA > 2:152152/1‑143 CGGCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCC < 1:581143/143‑1 GCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGCGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATC < 1:409040/143‑1 caggatggaaaaGGGTGAAGAGATAACAGAAGCCTGGAAAGATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCC < 1:202775/131‑1 CTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGGAGAGCCTAATCCGAAA > 2:84083/1‑143 TGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAA < 1:411597/143‑1 aTAATGGGTTAAGTGAAAACAGATGTCTGGAAATATAGGAGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAG < 1:107718/142‑1 GGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGGTT > 1:454064/1‑143 ggGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTT < 1:220573/141‑1 GTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAACAAGGCGATTTTTTTT > 2:429740/1‑143 ATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGAAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGGCTAATCCGAAAAAGGCGATTTTTTTTGCC > 2:693189/1‑143 TAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGCTTTTTTTTtcat > 2:259741/1‑139 TAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTCTTACGCCT > 2:783321/1‑143 ATGTCTCGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCTAAAAAGGCGATTTTTTTTGCCTGAGTGA < 2:65020/143‑1 CTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAACACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGGGAGCAA > 1:110893/1‑143 AGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCG > 2:108665/1‑143 GGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGATGGCGCG > 1:780837/1‑143 GGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCGGAGTGAGCGAGTCGGCGGgcccg > 1:121942/1‑138 ATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT < 1:458238/143‑1 CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651408‑1651548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT < NC_000913/1937140‑1937003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |