New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1651548	NA (NA)	50 (1.120)	43/284	0.1	96.2%	intergenic (+11/‑3)	insD1/intQ	IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related
	?	NC_000913	= 1937140	2 (0.040)					coding (489/870 nt)	yebK	putative DNA‑binding transcriptional regulator

CTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCT  >  NC_000913/1651409‑1651682                                                                                                                                            |                                                                                                                                       cTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGGTGGGTTATCGCTCGTCATTGGATTATCTGCGGCAGCGGGCTTGTAATGGGTGAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAg                                                                                                                                     <  1:68008/143‑1 (MQ=11)   tGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATGTCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGACATATAGGGGCAAATCCACAGGt                                                                                                                                   >  2:503841/1‑143 (MQ=17)          gCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTATGGAAATATAGCGGAAAATACACAGGTGAAATaa                                                                                                                            >  1:634949/1‑142 (MQ=11)           cGTGCGCGCATTTGATCGCATGGCGTCCGCAGCGTGCGCGGGGTTATCGCTCGCCTCGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGCGATACCAAATGCCTGGAAATAGAGGGGCAAATCCACAGGTGAACTACg                                                                                                                           <  2:562867/143‑1 (MQ=14)            gtgtggtgaTTATAACGAGTGGCATCCGTATAGGGCGCGGGGGTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGc                                                                                                                          <  2:544268/135‑1 (MQ=14)            gTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGc                                                                                                                          >  2:53004/1‑143 (MQ=40)                  gCACTATAACGCACGGCATCCCCATAGTGCGCTGGGTTATCGATAGTAACCGGAATATCTGCGGCAGCCGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCctct                                                                                                                    <  1:29474/143‑1 (MQ=14)                     ttATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCCCtgtt                                                                                                                 >  2:591810/1‑143 (MQ=255)                           cGAATTGCATCCGCAAAGTGCGCCAGGATATCGCACGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTTTTAc                                                                                                           <  1:182128/143‑1 (MQ=17)                           cGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTCAGTGATAACAGATGTCTGGAAATAGAGGGGCAAATCCACAGGTGAACTACGCTCCTCtgttggtgag                                                                                                           >  2:778728/1‑140 (MQ=255)                           cGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTAc                                                                                                           >  2:396888/1‑143 (MQ=255)                            gaagcgCAGCCGCATAGTGCGCTGGGTTATCGCTCGCGACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACg                                                                                                          <  2:575487/138‑1 (MQ=255)                            gAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACg                                                                                                          <  2:178229/143‑1 (MQ=255)                                  cacccGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATaa                                                                                                    <  1:644990/140‑1 (MQ=255)                                   aTCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGTTGAACTACGCTTCTCTGTTTGTTTCGccttatc                                                                                                   >  1:167553/1‑137 (MQ=14)                                     gcGCATGGTGCGCTGGGTTATCGCCCGCCACGGGCATATCTGCGGCCGCGGGCTTGTCATGGGTTACGTCATAACCGATGTCTGGAAATATAGGGCCCAATCCACAGGTCAACTACGCTCCTCTGTTTGTTACGCAATaaaaa                                                                                                 <  2:724813/142‑1 (MQ=18)                                     ccGCATAGTGCGCTGGGGTGTCGCTCGCCACGGGAATATCTGCGGCCGCGGGCTTGTAATGGGTCAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATaaaaa                                                                                                 <  2:630596/143‑1 (MQ=255)                                      cgcgTAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGGTGTCTGGAAATATAGTGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAAc                                                                                                <  2:178390/143‑1 (MQ=255)                                               cgcTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGAGAACAGAGGTCTGGCAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGtttt                                                                                       >  1:213180/1‑143 (MQ=255)                                                  tGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGa                                                                                    >  2:582660/1‑143 (MQ=255)                                                          cgctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaa                                                                            >  2:149123/1‑143 (MQ=255)                                                           gctcggCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaaa                                                                           <  2:455104/143‑1 (MQ=255)                                                           gctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCGGGCGATGTAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATGAAAACTGGTGTTTGCGACTATACaac                                                                           >  2:722888/1‑142 (MQ=21)                                                                ctgcggtatcttCTGCGGCAGCGGGCTTGTAATGGGTTATGGGATNACAGATGTCTGGGAAGATAGGGGCACATCNACAGGTGAACTACGCTCCNCTGTTTNTTACGCNATAAAAACTGGTGTTTTCGACTATGCAAAACAGt                                                                      <  2:486976/132‑1 (MQ=25)                                                                  aCGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGtct                                                                    >  2:242051/1‑141 (MQ=255)                                                                                 gCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAAt                                                     >  1:9821/1‑143 (MQ=255)                                                                                         cTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaaaa                                             >  1:338296/1‑143 (MQ=255)                                                                                          ttGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaaaaa                                            >  1:638099/1‑143 (MQ=255)                                                                                              aaTGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAATTCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAATCTGGTGTTGTCGACTATGCAAAACAGTTTCCCTCCTCACACAATCTTGAAAAATTTg                                        <  2:92074/143‑1 (MQ=38)                                                                                                    gtAAGGGAGAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGGTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAgg                                  <  2:729234/142‑1 (MQ=255)                                                                                                       aGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGccc                               >  2:121253/1‑143 (MQ=255)                                                                                                         tGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAACACTCCGTGCGGCCCGa                             >  2:300642/1‑143 (MQ=39)                                                                                                            tAAGAGGTGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACaa                          <  2:69172/143‑1 (MQ=255)                                                                                                                aGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGagt                      >  2:707799/1‑141 (MQ=255)                                                                                                                    ttCTTGAAGTTTATGGGTAAATCCACAGTTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTTGTGTTTGCGACTATGCAAAACAGTTTCCCTCCTCACTCAATCTGGAAAAATTTTGTGAGGCCCGACAAGATTTAAc                  <  2:634949/142‑1 (MQ=255)                                                                                                                     tCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAcc                 >  2:300603/1‑143 (MQ=255)                                                                                                                         gAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATCAAAACTGGTGTTTTCGCCTATGCAAAACAGTTTCACTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATaa             >  2:528967/1‑143 (MQ=255)                                                                                                                          aaaTTTAGGGGCAAGTCCACAGGCGACCTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATaaa            <  2:87348/143‑1 (MQ=255)                                                                                                                          aaaTATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAACATTTGGTGAGGCCCGACAAGACTTAACCATaaa            >  1:584806/1‑143 (MQ=255)                                                                                                                           aaTATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATaaaa           <  2:269910/143‑1 (MQ=255)                                                                                                                                    gCAAATCCACAGGTGAACTACGCTACTCTTTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCt  >  2:278914/1‑143 (MQ=255)                                                                                                                                            |                                                                                                                                       CTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCT  >  NC_000913/1651409‑1651682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.