| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4027325 = | NA (NA) | 19 (0.470) | 3/260 | 6.3 | 27.9% | noncoding (5/281 nt) | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences |
| ? | NC_000913 | = 4027520 | 49 (1.200) | noncoding (200/281 nt) | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4027475‑4027325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgtcgcatcAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAAC < NC_000913/4027520‑4027387 GGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGC > 2:16426/1‑143 cCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCG < 1:513113/142‑1 ACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTAGTTGTAGGCACGGTACGACGCGACAGCGTCGCATCAGGCAT > 1:385729/1‑143 tagcgCGCGACAGCGTCGGATCAGGCATCATGCACCAATTGCCGGATGCTGCGTAATGTCCTTATCCGGCCTACGGTTCGGCCTATTTGCAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGG < 2:309043/138‑1 AGACGCGCCAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCCGACTACCTGTAGGCACGATAAGACGCGACAGCCTCGCATCAAGCACGCCGCACCAGTTGCgtcat > 2:314289/1‑138 GTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTACACGCCTTATCCGGCCTCCGGTTCGGACTGTTTGTAGGCACGATACGACGCGACAGCGTCGCATCCGGCATCATGCACCAATTCCAGCATGCGGCGTCAACG > 2:514384/1‑143 catgcTGCCCCAATTGCCGGAGGCGGCGTAAACGCCTTACCCGGCCCACGGTTCGGCCTATATGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGC < 2:764792/138‑1 CATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGC < 1:384954/143‑1 CATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAGTTGCCGGATGCGGCGTAAAGGCCTTATCCGGCCTA > 1:190669/1‑143 GCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGG > 1:16479/1‑143 CCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAATCGCCTTATCCGGCCTACGGTTC > 1:330903/1‑143 CCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTC < 1:214972/143‑1 AATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGG > 1:542708/1‑143 GCCGGATGCGGCGTAACCGCCGTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTA < 1:296050/143‑1 GGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGACAAGACGCGACAGCGTCGCATCAGGCATCATGCGCCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTT > 1:230170/1‑143 TGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTA < 1:272487/143‑1 cCGGCGTAAACGCCTTATCCGGCCTCCGGTCCGGAATATGTGTAGGCACGATAAGACGCGACAGTGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAG < 2:280182/142‑1 CGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACCATGCTGAGGCACGATAgg > 1:285572/1‑141 CCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGAC < 2:16479/143‑1 ggcCGGTGCGGGCTAGTTGTCGGCACGATAAGACGCGGCCGGGTCGCATCAGGCATCATGCACCAATTGCCGGGTGCGGCGTAAACGCGTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTC < 2:704854/140‑1 CTACGGTCCGGACTACTTGTAGGCACCATAAGACGCGACACCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGTTTCTGACTATTTGTAGGCACGATAAGACGCGACAGCGTC < 1:61357/143‑1 CGTGGCATCAGGCATCGTGCCCCAATGGCCGGAGGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAAC < 2:220215/143‑1 GGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4027475‑4027325‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgtcgcatcAGGCATCATGCACCAATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGGACTATTTGTAGGCACGATAAGACGCGACAGCGTCGCATCAGGCATCATGCACCAATTGCCGGATGCGGCGTAAAC < NC_000913/4027520‑4027387 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |