New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4027325 =	NA (NA)	19 (0.470)	3/260	6.3	27.9%	noncoding (5/281 nt)	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences
	?	NC_000913	= 4027520	49 (1.200)					noncoding (200/281 nt)	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTC  >  NC_000913/4027393‑4027662                                                                                                                                |                                                                                                                                               gccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGgcg                                                                                                                                 >  2:679380/1‑143 (MQ=255)     cATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTc                                                                                                                             <  1:656328/143‑1 (MQ=255)         cGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAt                                                                                                                         <  1:101164/143‑1 (MQ=255)           gCAATGGGTTCATCATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCa                                                                                                                       <  2:9836/143‑1 (MQ=255)              aTTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGc                                                                                                                    >  2:260964/1‑143 (MQ=255)               ttGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATTCCTGATGCGACGCTGGCGCGTCTTATCAGGcc                                                                                                                   >  1:425893/1‑143 (MQ=255)                tgttGCATGATGCCTGATGCGACGCTGTCGCGCCTCCTCGTGCCTACAAATAGGCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt                                                                                                                  <  1:406640/140‑1 (MQ=14)                               gATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGAt                                                                                                   <  1:31924/143‑1 (MQ=255)                               gATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCACGTCTTATCAGGCCTACATTGGTGCCGGAt                                                                                                   <  1:268621/143‑1 (MQ=255)                                ctGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGCCCGAACCGTACGTCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATc                                                                                                  <  2:374263/142‑1 (MQ=255)                                 tGCGCCGCTCTCGCGTCTTACCGTGGCTACCAATATGCCGAGCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCg                                                                                                 <  1:163595/143‑1 (MQ=17)                                 tGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCg                                                                                                 <  1:548738/143‑1 (MQ=255)                                  gCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAGGCCGCATCCGGCAATTGGTGCCTGATGCCTGATGCGACACTGGCCCGTCTTATCAGGCTCTGATTGCTGCCGGATCgg                                                                                                >  1:338835/1‑143 (MQ=14)                                  gCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCGTGCCTACATCGGGGCCgagccgg                                                                                                >  2:455232/1‑137 (MQ=1)                                            cgcgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGAt                                                                                      <  1:679380/143‑1 (MQ=255)                                             gcgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTAACAGGCCTACATTGGTGCCGGATCGGTCGCCCgggca                                                                                     >  2:531334/1‑140 (MQ=255)                                              cgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATaa                                                                                    >  1:100710/1‑143 (MQ=255)                                               gTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAg                                                                                   <  1:8813/143‑1 (MQ=255)                                                  ttATCGTGCTTACAGATAGTCCGAACCGAAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACTTGGTGCATGAGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCg                                                                                <  1:392168/143‑1 (MQ=18)                                                      cGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCa                                                                            <  1:632265/143‑1 (MQ=255)                                                       gTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCATGATGCGACGCTGGCGCGTCTTATCAAGCCTACATTGGTGCCGGATCGGTAGACAGGACAACGCGTCCAc                                                                           >  2:103816/1‑143 (MQ=17)                                                           cTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGCTCGGTAGCCCGGATAAGGCGTTCccgccg                                                                       >  1:368257/1‑143 (MQ=255)                                                                aaTAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATcc                                                                  >  1:31026/1‑143 (MQ=255)                                                                  tAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                                                                <  2:384954/143‑1 (MQ=255)                                                                  tAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCgg                                                                <  1:537201/143‑1 (MQ=255)                                                                     tCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATACGGCGTTCACGCCGCATCCGGCaa                                                             >  1:161050/1‑143 (MQ=255)                                                                     tCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGAGAAGGCGATCACGCCGCAGCCGGCaa                                                             >  2:752719/1‑143 (MQ=255)                                                                       cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGt                                                           >  2:87720/1‑143 (MQ=255)                                                                       cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCCGATAAGGCGTTCCCGCCGCATCCGGCGAGt                                                           >  1:506341/1‑143 (MQ=255)                                                                       cGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGAGCCGGATCGGTAGACCGGCTAAGGCGTTCACGCCGCATCCGGCAAGt                                                           >  1:327404/1‑143 (MQ=255)                                                                           gcGTAGGCGGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCCGATACGACGCTGGCGCGTCTTATCAGACCGACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGtt                                                       <  2:514776/142‑1 (MQ=21)                                                                           ccGTAGGCCGGATAAGGCGTTTACGCCGGATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGtt                                                       <  1:468849/143‑1 (MQ=255)                                                                            cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTa                                                      >  1:163407/1‑143 (MQ=255)                                                                              tAGGCCTGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTaaa                                                    <  1:468560/143‑1 (MQ=255)                                                                                ggCCGGTGAAGGCGTTCACGCCGCCTCCGGCAATTGGTGCATGCTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAcc                                                  <  2:446536/143‑1 (MQ=25)                                                                                  ccGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCCAGACGCCTGATGCGACGCTGGCGCGTCCTATCAGGCCTACATTCGTGCCGGCACGGTAGACCGGACAAGGCCGCCACGCCGCATCCGCCCAGTCGGTAAACCCg                                                >  2:276082/1‑143 (MQ=18)                                                                                   cGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTGAACCCGc                                               >  2:607028/1‑143 (MQ=255)                                                                                     gATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTc                                             <  1:280182/143‑1 (MQ=255)                                                                                            cGTGTACGCCGCAGCCGGCAAGTGGTGCATGATGCGTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACAcc                                      <  1:615080/143‑1 (MQ=255)                                                                                                tACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCg                                  <  1:464285/143‑1 (MQ=255)                                                                                                gaCGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCg                                  <  1:764792/142‑1 (MQ=255)                                                                                                 aCGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGc                                 >  1:222608/1‑143 (MQ=255)                                                                                                     cgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATCAGGCGTTCACGCCGCATCCGGCAAGTGGTTACACCCGCGCAAACACCGTCGCAATa                             >  1:146195/1‑143 (MQ=255)                                                                                                       aaTCCGGCAATTGGTGCATCATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAcc                           <  2:513113/142‑1 (MQ=255)                                                                                                                      gCATGATGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTACATTGGTCCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGCCAAGTGGGTAAGCCCGCTCCAACACCGGCGCAATTCTCTAACCCAGACCGAt            >  1:285591/1‑143 (MQ=25)                                                                                                                       cgtgaggCCGGAGGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATa           <  2:362071/141‑1 (MQ=255)                                                                                                                       cATGATGCCTGATGCGACGCTGGCTCGTCTTAGCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATa           <  2:360911/143‑1 (MQ=255)                                                                                                                              ccTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGGAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGGTGGTTAAACCCGCTCAACCACCGTACCAACACCCTAGCCCAGCCCGATACACAacg    >  2:266270/1‑143 (MQ=25)                                                                                                                                tGATGCGAGGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACAtcgtc  <  2:740708/143‑1 (MQ=255)                                                                                                                                |                                                                                                                                               GCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTC  >  NC_000913/4027393‑4027662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.