New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4027325 =	NA (NA)	19 (0.470)	3/260	6.3	27.9%	noncoding (5/281 nt)	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences
	?	NC_000913	= 4027520	49 (1.200)					noncoding (200/281 nt)	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element, contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AGATCGCCTGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCG  >  NC_000913/4027191‑4027464                                                                                                                                       |                                                                                                                                             aGATCGCCTGTTTGGCGATGCGTTTGCATTTAGCTGAGATATAAAAAAACCCGCCCCTGACAGGCTGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACg                                                                                                                                      <  2:678523/143‑1 (MQ=255)         tGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTcgcg                                                                                                                              >  2:330903/1‑143 (MQ=255)                   tgctgttGCATTTATCTGAGATATAAAAAGTCCCGCGCCTGACAGGCTGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGTCGTATCTGGCAACCCATGCCCGATGCGATGCTGTCGCGTCTT‑ATCGTg                                                                                                                   <  2:305718/138‑1 (MQ=255)                    gCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGc                                                                                                                  <  1:547638/143‑1 (MQ=255)                          gCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACaa                                                                                                            >  1:157059/1‑143 (MQ=255)                           cactgaTCTGAGACACAAAAAAGCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACaaa                                                                                                           <  2:632607/138‑1 (MQ=255)                           cATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTTCCTACaaa                                                                                                           >  2:468849/1‑143 (MQ=255)                                   tGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTGCGa                                                                                                   >  2:656328/1‑143 (MQ=255)                                    ggaatatAAAAAACACCCACCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATTACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGaa                                                                                                  <  1:246667/140‑1 (MQ=38)                                          taAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATCCGGGGTTGTCGCGTCTT‑GTCGTTCCTACAAATAGTCCGAACCGTAg                                                                                            >  2:268621/1‑143 (MQ=39)                                           aaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAgg                                                                                           >  2:174596/1‑143 (MQ=255)                                           aaaaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGGCGT‑ATCGTGCCTACAAATCGTCCGAACCGTAgg                                                                                           >  2:548738/1‑143 (MQ=255)                                             aaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCCTTTAGATCTATGACGTATCTGGCAAACCATGCCCGATACGACGCTGTCGCGTCTT‑ATAGAGCCTACAAATAGTCCGAACCGTAGGcc                                                                                         >  1:374263/1‑143 (MQ=255)                                             aaaaaCCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTGCGAACCGTAGGcc                                                                                         >  1:514776/1‑143 (MQ=255)                                               aaaCCCGCCCTTGACATGCGGGAAGATCTTCAACTAAACTGTTATTCAGTGGCAGCTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCgg                                                                                       <  2:157059/143‑1 (MQ=25)                                                    cGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTACTCAGCGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGCAGGCCGGATAAg                                                                                  >  2:472894/1‑143 (MQ=255)                                                         cTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCCGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGtt                                                                             <  1:227658/143‑1 (MQ=255)                                                            aCAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTAGCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAc                                                                          <  1:392431/143‑1 (MQ=255)                                                                gCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAcgccg                                                                      >  1:446536/1‑143 (MQ=255)                                                                  gggAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTTTTCAACG‑GCCGACAAATAGTCCGAACCGTAGGCCGGCTAAGGCGTTTACGCCGCa                                                                    >  1:740708/1‑143 (MQ=37)                                                                              aaCTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGCTCACGCCCCACCCGGCAAtagc                                                        >  2:615080/1‑140 (MQ=25)                                                                                 tAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGc                                                     >  1:16426/1‑143 (MQ=255)                                                                                   aaCTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACTTGGTGCat                                                   >  1:632914/1‑143 (MQ=255)                                                                                     cggTTATGCAGTGGCAGTTAGGTCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAAGCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCatga                                                 <  1:375741/141‑1 (MQ=255)                                                                                     cTGTTAGTCAGTGGCATTTAGAGCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCatga                                                 <  1:86434/143‑1 (MQ=255)                                                                                      tGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCatgat                                                >  2:31924/1‑143 (MQ=255)                                                                                       gTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCCT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGAGTTTACGCAACATCCGGCAATTGGTGCataatg                                               >  2:392168/1‑143 (MQ=21)                                                                                        ttATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGc                                              >  1:314289/1‑143 (MQ=255)                                                                                              aGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATg                                        >  1:170305/1‑143 (MQ=255)                                                                                                tGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATCGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCACTTGGTGCATGATGCCTGATGCg                                      >  1:514384/1‑143 (MQ=255)                                                                                                tGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCGTGGTGCCTGGTGCg                                      >  1:360911/1‑143 (MQ=255)                                                                                                tGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGCCGCCTGATGCg                                      >  2:208671/1‑143 (MQ=255)                                                                                                tGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTCTCGCCGCGT‑AACGTGACTTAGAAAAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCg                                      >  1:362071/1‑143 (MQ=18)                                                                                                       tAGATCTATGACGTATCGGGCAAACCCTGCCCTATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACCAATCGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGt                               <  2:497553/143‑1 (MQ=17)                                                                                                            cTATGACGTATCTGGCAAAGCAGGCCCGAGGCGACGCTGGCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGt                          <  1:2161/143‑1 (MQ=255)                                                                                                             tATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATAATGCCCTATGAGAGGCTGGCGCGTc                         >  2:581230/1‑143 (MQ=14)                                                                                                               tGACGTATCTGGCAAACCATGCCCGATCTGCATCAGGCGTGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGGTGCCTGATGACTGATGCGACGCTGTCGCGTCtt                       >  2:640838/1‑143 (MQ=14)                                                                                                                gACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTa                      >  2:448834/1‑143 (MQ=255)                                                                                                                     aTCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTg                 >  1:75318/1‑143 (MQ=255)                                                                                                                      tCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCGT‑ATCGTGAAAGGTGATACTCCTTACGGTTGGCAGGAGAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGc                <  2:345668/143‑1 (MQ=17)                                                                                                                        tttaaccacttGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATACGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGCCGCGGGCGCGTCTAGTCGTGCCt              >  2:468560/11‑143 (MQ=11)                                                                                                                          gCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCGGTCGCGTCTTATCGGGcatcc            >  2:140544/1‑139 (MQ=255)                                                                                                                             caCCATGCCCGAGGCGACGCTGGCGCGCCTC‑AGCGGGCCTACAAGTAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACaaa         <  2:745082/142‑1 (MQ=14)                                                                                                                                 aTGCCCGATGCGACGCTGGCGCGTCGT‑ATCGCGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGt     <  1:172508/143‑1 (MQ=255)                                                                                                                                  tGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGACCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTc    <  1:36120/143‑1 (MQ=255)                                                                                                                                  tGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTc    <  1:389014/143‑1 (MQ=255)                                                                                                                                    cccGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACGAATAGTCCg  <  1:474124/143‑1 (MQ=255)                                                                                                                                       |                                                                                                                                             AGATCGCCTGTTTGGCGATGCGTTTGCATTTATCTGAGATATAAAAAAACCCGCCCCTGACAGGCGGGAAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTT‑ATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCG  >  NC_000913/4027191‑4027464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.