| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1651548 | NA (NA) | 53 (0.970) | 42/284 | 0.2 | 98.2% | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related |
| ? | NC_000913 | = 1937140 | 1 (0.020) | coding (489/870 nt) | yebK | putative DNA‑binding transcriptional regulator | |||||
ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651407‑1651548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGATGG < NC_000913/1937140‑1937001 ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAG < 2:773203/143‑1ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAG < 2:210738/143‑1ACCCTGCAGAGGCGTTCGAGCATGATAACGCATCGCATCCGCATAGTGCGCTGGGTGATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAG < 2:326957/143‑1 TTGCAGAGGCGTTCGAGCATTATAACAAAAGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGCATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATACCAGATGTCTGGAAATATAGGGGCAAATCCAGATA > 1:341974/1‑143 GCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGA < 1:954751/143‑1 CGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACA > 1:508523/1‑143 GAGCATTATAACGAATGGCGTCCGCATAGCGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGCAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACAC < 1:69442/143‑1 TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCCGGAAATCTAGGGGCAAATCCCGATATCATCGGAGCACACCCCGGGAA > 2:906510/1‑143 gACGGATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAAC < 1:423072/142‑1 GCACCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAAC < 2:166256/143‑1 TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAA < 1:895708/143‑1 cctggtgGTGCTCTGGGTCAGCGCACGCTTCGTGTATAGCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 1:147298/136‑1 CCGCATGGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 1:399713/143‑1 CATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAAAATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAA > 2:355297/1‑143 ATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCACATCCAGATATCATCGGAGTACACCACCGGAACCTTAAACCGCAAGGAC > 1:361164/1‑143 AGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTT < 2:194657/143‑1 GTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTA < 2:804963/143‑1 TGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGCAATATCGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAAGATGAAAACGAAAGAGCTTtt > 2:252821/1‑141 TTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAAAATTAAAACGAAAGAGCATATGCATCGCAc > 2:126597/1‑142 TCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAAATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATCAAAAGGAAAGAACTAAGTCATCGCAGCGg > 1:31455/1‑142 GCTGGCCACGGGAATCCATGAGGTTGCGGGCTTGTAATGGGTTAAGTGATCACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGG < 1:710980/143‑1 ACGGGAAGATCTGCGGCAGCTGGCTTGGAGTGGGTTAGGTGATAGCAGGTGTCTGGAAATATAGGGGCAAAGCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGG < 2:172970/143‑1 GGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCGCCGGAATATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCG > 1:877292/1‑143 TCTGCGGCAGCGGGCTCGTAATGGGTTAAGCGATAACAGATGTCTGGAAATACAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAG < 2:1297/143‑1 CTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA < 2:290376/143‑1 CTGCGGCAGCGGGCTCACAATGGGTTAAGTGATAACAGAAGTCAAGAAATAGAGTGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA < 2:903447/143‑1 GCGGCAGCGGGGGTGTAATGGGTTAAGTGATAACAGATGTCTGGAAAGATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTAGTCATCGCATCGTGGGCAACGGCGGCTGAAGAGC < 2:403677/143‑1 GCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACACTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGg > 1:741097/1‑142 AGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAAT > 2:776242/1‑143 AGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAAT > 2:683574/1‑143 GTAATGAGTTAAGTGATAAGAGATGTCTGGAAACATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAG < 2:113027/143‑1 AATGGGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCTGAACATTGAAACGCAAGAACTTTTTCATCGCATCGTGGGTAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGC < 2:778395/143‑1 TGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGA > 2:540682/1‑143 TGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGT > 1:347498/1‑104 TGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGT < 2:347498/104‑1 AAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTT < 2:317383/143‑1 ggGATAACTGACGTCCGCAACTACAGGCGCAAATCCAGATACCATCGGAGCACACCACCGGAACATTAAAACGAAAGAACTTATTCCTCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTT < 1:322301/141‑1 GTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGACTACACCACCGGAACATTAAAACGAAAGAACTTATTCAGCGCATCGTGGGCAACGGCGGCTGAAGACCCCAACCCGACAACGCCGCTTCTTTTT > 2:853010/1‑143 TGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGACAAAGGCGGTGTTTTTTG > 1:449211/1‑143 ATACCAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCCTCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGGAAAGGGCGATgtcatttacc > 2:453778/1‑133 AACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTG > 2:591527/1‑143 AACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGAGTTTTTTTGCCTG > 1:438317/1‑143 CAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAG > 2:269354/1‑143 AGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGT < 2:508523/143‑1 GTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGC < 1:294835/143‑1 TGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAG < 2:23836/143‑1 TGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAG > 1:612577/1‑143 GAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTC < 2:654654/143‑1 GAAATATAGGGGCAAATCCAGATATCACCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCGTCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTC < 2:220965/143‑1 ATATAGGGGCAAAGCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGAC < 1:252821/143‑1 GGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTACTCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGG < 2:457198/143‑1 GCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAACAGGCGATATTTTTTGCCTGCGTGAGCCAGTCGcaaccgaggt > 1:755868/1‑133 CCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTTCCTGAGTGGGCAAGTCGACGGCCCGGTTGCTGG > 2:154750/1‑143 ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651407‑1651548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGATGG < NC_000913/1937140‑1937001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |