New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1651548	NA (NA)	53 (0.970)	42/284	0.2	98.2%	intergenic (+11/‑3)	insD1/intQ	IS2 transposase TnpB,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related/pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related
	?	NC_000913	= 1937140	1 (0.020)					coding (489/870 nt)	yebK	putative DNA‑binding transcriptional regulator

AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATT  >  NC_000913/1651414‑1651690                                                                                                                                       |                                                                                                                                               agagGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGaa                                                                                                                                        <  2:805653/143‑1 (MQ=35) agagGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGAGGCAAATCcacatcgcgc                                                                                                                                        >  1:558840/1‑137 (MQ=2)       gTTCGAGCATTATAACGAGTGGCATCCGCATCGTGCGCTGGGTTCTCGGTCGCCATGGGACTATATGCGGAAGCGGGATTGTAGTGGGTTACGTGATAACAGATGTCTGGAAATATAGGGGCAAATCTCCAGGTGAACTACGc                                                                                                                                  >  2:162863/1‑143 (MQ=11)              cATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCAAGGGACTATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGGCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCGCCTCtg                                                                                                                           >  1:394120/1‑143 (MQ=255)                ttggacccactGGCCTCCGCATCGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGGTTGTAATGGGTTAAGTGTTCACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCtgtt                                                                                                                         <  1:45285/133‑1 (MQ=17)                 tataACGAATGGCATCCCCATCGTTCGCTTTGTTATCGCTTAATACCGTTGTTGCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCtgttt                                                                                                                        <  2:214915/143‑1 (MQ=17)                  ataACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTACTGGGCTAAGTGATAGCAGATGTCCGGAAATTTAGGGGCAAATCCACAGGTGAACTACGCTCCTCtgtttg                                                                                                                       <  2:873176/143‑1 (MQ=17)                      tgcaTGGCATCCGCATAGTGCGCTAGGTCAGCGCACGCCACGGGAATATCCGCGGCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTCGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTAc                                                                                                                   <  2:247607/140‑1 (MQ=17)                      cGAATGTGATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTAc                                                                                                                   <  2:759119/143‑1 (MQ=255)                       gAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACg                                                                                                                  >  2:582246/1‑143 (MQ=255)                             cATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATACACGGTGACCGCAAACATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATaa                                                                                                            >  2:696479/1‑143 (MQ=18)                              aTCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATaaa                                                                                                           <  2:869174/143‑1 (MQ=255)                              aTCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATaaa                                                                                                           >  2:791836/1‑143 (MQ=255)                                ctgCATAGTGCGCTGGGTTATCGCTCGCCACGGGAAACGCATTGGTAGCGTGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATaaaaa                                                                                                         <  1:421312/141‑1 (MQ=18)                                   cATAGAGCCCTGCGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTg                                                                                                      <  1:229080/143‑1 (MQ=255)                                      aGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGgtg                                                                                                   >  2:729286/1‑143 (MQ=255)                                      aGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGgtg                                                                                                   >  2:463616/1‑143 (MQ=255)                                        tGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCGCTGTTTGTTACGCAATAAAAACTGGTGtt                                                                                                 >  2:511463/1‑143 (MQ=255)                                          cgcTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGtttt                                                                                               <  2:681349/143‑1 (MQ=255)                                           gcTGGGTTAGCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTc                                                                                              <  2:390870/143‑1 (MQ=255)                                             ggggtgttcgcgcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGa                                                                                            <  1:302874/136‑1 (MQ=255)                                                     cgctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCGTGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTTGTTGCTACGCAATAAAAACTGGTTTTTTCCACTTTGaaa                                                                                    >  2:204598/1‑143 (MQ=18)                                                      gctcgcCACGGGACTGTCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaaa                                                                                   <  2:274383/143‑1 (MQ=255)                                                       ctcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCaaaa                                                                                  <  2:72113/143‑1 (MQ=255)                                                        tcgcCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAAc                                                                                 >  2:336214/1‑143 (MQ=255)                                                             aagggAATACCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGttt                                                                            <  2:748547/141‑1 (MQ=255)                                                             aCGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTAGAAATATAGGGGCAAATCCACAGGTGAACTACGATCCTCTGTTTGTTACGCAATAAAAACTGGTGATTTCGACCATGCAAAACAGttt                                                                            >  1:372786/1‑143 (MQ=255)                                                                      tCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCa                                                                   >  2:614186/1‑143 (MQ=255)                                                                      tCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCATCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCctcctcc                                                                   >  2:543316/1‑142 (MQ=255)                                                                        tGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAATCACACACCCCCCAACATATCCTAATGTAAACTGGTGTTTTCGACTATGCACAACAGTTTCCATCCTCACg                                                                 >  1:424214/1‑143 (MQ=9)                                                                              aGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCt                                                           >  2:101117/1‑143 (MQ=255)                                                                               cggggcgtcgcaTGGGCTAAGTGATACCAGTTGTCTGCAAAGATCGGGGCATACCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCACTAAAACCTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTg                                                          <  1:432672/132‑1 (MQ=255)                                                                                  ggCTTGTAAGGGGTTAAGTGAGAACATGTGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCGCCTCTGGTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaa                                                       <  1:391129/143‑1 (MQ=38)                                                                                   gCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaaa                                                      >  1:845822/1‑143 (MQ=255)                                                                                     ttGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaaaaa                                                    >  1:254551/1‑143 (MQ=255)                                                                                     ttGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaaaaa                                                    >  2:192284/1‑143 (MQ=255)                                                                                     ttGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGaaaaa                                                    >  1:626100/1‑143 (MQ=255)                                                                                       gtgaTGGGTTAAGCGATAACAGATGTCTGGGAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAAtt                                                  <  1:511463/140‑1 (MQ=255)                                                                                       gTAATGGGTTAAGTGCTAACAGATGTCCGGAAATATAGGGGCAAATCCACAGCTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAAtt                                                  <  1:689269/143‑1 (MQ=255)                                                                                        tAATGGGTTAAGTGATAACAAATGTCTGCAAATATAGAGGCAAATATACATGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTTGTGTTTTCGACGATGCAAATCAGTTTCCCTCCTCACGCAATCTGGAAAAAttt                                                 <  2:851787/143‑1 (MQ=38)                                                                                         aaTGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTg                                                <  1:791836/143‑1 (MQ=255)                                                                                          aTGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACGACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTGCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTgg                                               <  1:305180/143‑1 (MQ=255)                                                                                                  aGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGccc                                       >  2:808720/1‑143 (MQ=255)                                                                                                     gtttaCAGTTGTCTGGAAATTTATGGGCAAATCCACAGGTTAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGAc                                    <  1:552578/139‑1 (MQ=255)                                                                                                       tAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGAGaa                                  >  1:939844/1‑143 (MQ=255)                                                                                                          cAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCCCCTCACGCAATCTGGAAACATTTGGTGAGGCCCGACAAGAt                               >  1:806585/1‑143 (MQ=255)                                                                                                              tGTCTGGATATACGGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTaa                           <  1:707061/143‑1 (MQ=255)                                                                                                              tGTCTGGAAATACAGGGGCAAATCCACAGGTGAACGACGCTCCTCTGTGTGTTACGCAATAAAAACGGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTaa                           <  1:723926/143‑1 (MQ=255)                                                                                                                tCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAAcc                         >  2:749849/1‑143 (MQ=255)                                                                                                                  tGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCAt                       >  1:398028/1‑143 (MQ=255)                                                                                                                  tGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAAATGGTGTGGTCGACTATGCAAAACAGCTTCCCTCCTCACGCAATCTGGAAAACTTTGGTGAGGCCAGACAAGGTCTAACCAt                       >  1:464386/1‑143 (MQ=255)                                                                                                                             gggCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTTGTGAGGCCCGACAAGATTTAACCATAAAAGAACTgg            <  2:682272/143‑1 (MQ=255)                                                                                                                              ggCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGc           <  2:163029/143‑1 (MQ=255)                                                                                                                               gCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGCAAAATTTGGTTAGGCCCGACAAGATTTAACCAGAAAAGAACTggat          >  2:127584/1‑141 (MQ=255)                                                                                                                                      cacaGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAAt   <  1:729286/143‑1 (MQ=255)                                                                                                                                      cacaGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCACCTCCCGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAAt   <  1:463616/143‑1 (MQ=255)                                                                                                                                       acaGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAACCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAAtt  >  1:451362/1‑143 (MQ=255)                                                                                                                                       |                                                                                                                                               AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACAGGTGAACTACGCTCCTCTGTTTGTTACGCAATAAAAACTGGTGTTTTCGACTATGCAAAACAGTTTCCCTCCTCACGCAATCTGGAAAAATTTGGTGAGGCCCGACAAGATTTAACCATAAAAGAACTGGCTGAAAAATT  >  NC_000913/1651414‑1651690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.