New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4049912 =	7 (0.130)	74 (1.350)	51/284	0.1	91.4%	noncoding (15/109 nt)	spf	Spot 42 sRNA antisense regulator of galK translation, Hfq‑dependent
	?	NC_000913	4498182 =	NA (NA)					intergenic (+241/‑91)	intB/insC1	pseudogene, integrase homology,IS, phage, Tn, Phage‑related functions and prophages, KpLE2 phage‑like element, P4‑like integrase/IS2 repressor TnpA

TGATAAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4050053‑4049912 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGG  >  NC_000913/4498182‑4498321                                                                                                                                                                                                                                                                                            TGATAAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCCCAACAAAAAAGACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTAT                                                                                                                                             <  2:216863/143‑1     aagcccaggGCATCAGGCATTCCGGATCTGTTCTTCCGCCCAAGAAAAAGCGCCCCAGTCATTACTGACTGGGGGCGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGAC                                                                                                                                         <  1:481012/134‑1     AAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGAC                                                                                                                                         <  1:712771/143‑1     AAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGAAAAAATAGAGGTCTGAAAGATAGAACATCTTATAGAC                                                                                                                                         >  1:923726/1‑143     AAACATAGCGCATCAGGCACTACGGATCTTTTGTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGAC                                                                                                                                         <  1:865525/143‑1                     GCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTGAGCCACATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGCACATCTTATAGACTGGCCCCCTGACTCac                                                                                                                         >  1:721147/1‑141                            GGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGACAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAA                                                                                                                  >  2:564967/1‑143                                ctgtgctcTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAA                                                                                                              <  1:849731/135‑1                                 TTTTCTTTCGCCCGATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCGAGACAACCAAT                                                                                                             >  2:613061/1‑143                                    gCTTTCGCCGAAGAAACTACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATAGGCAGCCAAGTCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATC                                                                                                          <  1:132267/142‑1                                     CTTTCGCCCAATAAAAGACGCCCCAGTCATTAGTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA                                                                                                         <  2:647516/143‑1                                     CTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA                                                                                                         <  2:932808/143‑1                                     CTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA                                                                                                         <  2:65108/143‑1                                      TTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTCAAATATTCAGCCAAATCCGATTAAGATCGGAAAAAGGTCTGAAAGACAGAACACCTTATAGACTGGCCCCCTGCATCTCCACACAACCAATATCAC                                                                                                        >  1:675983/1‑143                                      TTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAC                                                                                                        >  2:191306/1‑143                                      TTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATACGATTACGTGAAGTAAAAGGGCTGAAGGATAGAACGTCTAGTAGGCTGGCCCCCCGAATCTACAGACAACGAATAGCAC                                                                                                        >  2:571208/1‑143                                        TCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTT                                                                                                      <  1:269945/143‑1                                         CGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTA                                                                                                     <  2:201354/143‑1                                            CCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAT                                                                                                  >  2:664982/1‑143                                            CCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTATGAAAGAAATAGCATCTTATAGACTGGCCCCCCGACTCTCCAGACAACCAATATCACCTAAAT                                                                                                  >  1:333914/1‑143                                             CAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGGAAAAGGTCTGAAAGATAGAACATCTGATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACagcacta                                                                                                 >  1:943062/1‑136                                              AATAAAAAACGCCCAAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGACTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCAAGACAACCAATATAACTGAAATAA                                                                                                >  1:307080/1‑143                                                        GCCCCAGTCAATACTGACTGGGGCGGCTAAAATATTCAGCCAAACCCGATTACGTGAAGTAAAAGGCCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCT                                                                                      <  2:291631/143‑1                                                         CCCCAGTCATTACTGACTGGGGCGGCTATTACATACAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTT                                                                                     <  2:396791/143‑1                                                          CCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCCCTTAAATAAGTGATAGTCTTA                                                                                    >  2:312113/1‑143                                                          CCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTA                                                                                    <  2:754292/143‑1                                                          CCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTA                                                                                    >  2:1350/1‑143                                                          CCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGGGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGGCTTA                                                                                    >  2:51791/1‑143                                                            CAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAT                                                                                  >  1:487117/1‑143                                                             AGTCATGACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACACCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATA                                                                                 <  1:425828/143‑1                                                              GTCATTACGGACTGGGGAGGCTAAAATATTCCGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC                                                                                <  2:701594/143‑1                                                                cagtagTGACTGGGGCGGCTAAGATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTA                                                                              <  1:50476/137‑1                                                                     CTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTT                                                                         >  2:627603/1‑143                                                                      TGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTCATAGTCTTAATACTAGTTTTT                                                                        >  1:29934/1‑143                                                                       GACTGGGGCGGCTAAAATATTCAGCCAATTCCGATTACGTGAAGTAAAAGGTCTGAAAGCAAATACATCTTATATACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                                                                       <  1:236546/143‑1                                                                       GACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                                                                       <  2:425339/143‑1                                                                       GACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                                                                       <  1:331470/143‑1                                                                       GACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA                                                                       <  2:86113/143‑1                                                                          TGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGGCTTAATACTAGTTTTTAGAC                                                                    >  1:128818/1‑143                                                                            GGGCGGCTAGAATATTCAGCCAAGTCGGAGTACGTGAAGTAAAAGGTCTGAAATATAGAACATCTTATATACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAGAAGTGATAGTCTTAATACTAGTTTTTAGACTA                                                                  <  1:273965/143‑1                                                                            GGGCGGCTAAGATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTCGTTTTTAGACTA                                                                  <  1:635361/143‑1                                                                            GGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGCCAACCAACATCTCTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTA                                                                  <  2:405364/143‑1                                                                            GGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTA                                                                  <  2:727404/143‑1                                                                                   TAAAATATTCCGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTATATAATTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTG                                                           <  1:467855/143‑1                                                                                   TAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTATTAATACTAGTTTTTAGACTAGTCATTG                                                           >  1:509116/1‑143                                                                                        TATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAA                                                      <  1:757462/143‑1                                                                                             AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTTGAGAACAGAT                                                 >  2:468262/1‑143                                                                                             AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAT                                                 >  1:351818/1‑143                                                                                             AGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAT                                                 <  1:709475/143‑1                                                                                                CAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAATCATCGAAGAACAGATAAT                                              >  2:769779/1‑143                                                                                                   ATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA                                           <  2:487117/143‑1                                                                                                    gCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAT                                          <  2:648524/142‑1                                                                                                    TCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTGATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAT                                          >  2:916850/1‑143                                                                                                    TCCGATGACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGAT                                          <  1:359276/143‑1                                                                                                      CGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGGGAACAGATGATTGATGT                                        >  1:117582/1‑143                                                                                                          TACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTA                                    <  2:923726/143‑1                                                                                                           ACGTGAAGGAAAAGGTCTGAAAGATATAACAGCTTATAGACTGGCTCCCTGAATCTCCAGACTACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAG                                   <  1:720728/143‑1                                                                                                            CGTGAAGTGAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGG                                  <  1:138062/143‑1                                                                                                              TGAAGTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGC                                <  2:409388/143‑1                                                                                                                  GTAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGA                            <  2:603895/143‑1                                                                                                                   TAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATGTCGCTTAAATAAGTGATAGTCTTAATACTAGTCTTTAGCCTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGcg                           >  2:255488/1‑141                                                                                                                   TAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTATTACTAGTTTTTAGACTAGTCATTGCGGAACAGATCATTTATGTCTTAGGTCCGGAG                           >  1:687219/1‑143                                                                                                                   TAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG                           >  2:157090/1‑143                                                                                                                   TAAAAGGTCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAG                           >  2:159395/1‑143                                                                                                                          TCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGGGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCA                    <  2:117582/143‑1                                                                                                                          TCTGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCA                    >  2:823258/1‑143                                                                                                                            TGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGA                  >  2:237315/1‑143                                                                                                                            TGAAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGA                  >  1:782263/1‑143                                                                                                                              AAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACG                <  2:322768/143‑1                                                                                                                              AAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACG                <  2:375350/143‑1                                                                                                                              AAAGATAGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACG                >  2:510941/1‑143                                                                                                                                   tgcggatctgaATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTA           >  2:716471/12‑143                                                                                                                                    AGAACATCTTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGGGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTCGGGCCGGAGAAACGCAGACGGCGTAC          >  1:604537/1‑143                                                                                                                                            TTATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTCGACTAGTCATTGGAGAGCATATGATTGATGCCTCAGGGACGGAGAAACGGAGACGGCGTACCACcccgg  >  2:371904/1‑138                                                                                                                                                                                                                                                                                            TGATAAACATAGCGCATCAGGCATTACGGATCTTTTCTTTCGCCCAATAAAAAACGCCCCAGTCATTACTGACTGGGGCGGCTAAAATATTCAGCCAAATCCGATTACGTGAAGTAAAAGGTCTGAAAGATAGAACATCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4050053‑4049912 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGG  >  NC_000913/4498182‑4498321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.