New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3845530 =32 (0.590)45 (0.900) 40/262 0.2 56.7% coding (1568/1767 nt) adeD cryptic adenine deaminase
?NC_000913 = 3992759 39 (0.780)coding (1608/2547 nt) cyaA adenylate cyclase

AGCCCCTGACTGGTTAGTTTTAGCGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3845680‑3845530
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtcggtgcAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCAG  <  NC_000913/3992759‑3992622
                                                                                                                                                                                                                                                                                                  
AGCCCCCGACTGGTTAGTTTTAGCGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATCGTACGCCGGTCGTGTAACGGCCCGCATTCACTGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGT                                                                                                                                                    <  2:700608/143‑1
  CCCCTGACTGGTTAGTTTTAGCGCGGGGATCACGGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGT                                                                                                                                                  <  1:902722/143‑1
     gatACTGGGTAGTTATAGTCCGCGGCTCATGGTCAGAGAAAGAAACGCCATCTGAATAATCGGCTCAGCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTGCCGCCAGCGACTGCGCCGTGTCGG                                                                                                                                               <  2:303399/140‑1
      TGACTGGTGAGTTTTAGCGCGGGGATCGCTGTGTCGTCATCGTGCGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGT                                                                                                                                              <  1:673598/143‑1
        ACTGGTTAGTTTTAGCGCGGGGATCACTGGCAGAGAAAGAACCGCCTTCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC                                                                                                                                            <  1:44900/143‑1
        ACTGGTGAGTTTCAGCGCGGCGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC                                                                                                                                            <  2:148648/143‑1
         CTGGTTAGTTTTAGCGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCA                                                                                                                                           >  2:6329/1‑143
           GGTTAGTTTTAGCGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGG                                                                                                                                         <  2:641380/143‑1
               AGTTGTAGCGGGGGGATCGCTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATGCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAG                                                                                                                                     <  2:145844/143‑1
                 TTTTAGCGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAACCGGCTCATCGGGTAACGGACCGCGTTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCG                                                                                                                                   >  2:219654/1‑143
                       CGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGG                                                                                                                             >  1:386864/1‑143
                       CGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGG                                                                                                                             >  2:102136/1‑143
                        GCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGG                                                                                                                            >  2:950785/1‑143
                        GCGGGAATCACTGGCAGAGAAAGAAGCGCCGTCTGAATAAACGGCTCAGCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGG                                                                                                                            <  2:413087/143‑1
                            ggcttcacgcGCAGAGAAAGAAACGCCATCTGAATACGCGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAA                                                                                                                         <  2:242863/133‑1
                              gaacactttCAGAGAAAGCAACGCCATCTGAATAAACGGCTCATCGGGTAGCGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATG                                                                                                                       <  2:169506/134‑1
                               TCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCCCGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGGCGTGTCGGTGCTGGTACGCGCAGCGGGGAATGGT                                                                                                                     >  2:389659/1‑143
                                CACTGGCAGAGAAAGAAACGGCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTG                                                                                                                    <  1:340349/143‑1
                                CACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTG                                                                                                                    <  2:456980/143‑1
                                   TGGCAGAGAACGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGA                                                                                                                 <  2:278884/143‑1
                                           ggAAGAAACGCCATCTGAATAAGCGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCG                                                                                                          <  1:448798/141‑1
                                            AAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGG                                                                                                         >  2:582587/1‑143
                                               GAAAGGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCGAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGA                                                                                                      <  2:148051/143‑1
                                                AAACGCCTTCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGAC                                                                                                     <  1:102136/143‑1
                                                AAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTACGCGCAGCGGGAAATGGTGCGACACGTCGGCGgc                                                                                                     >  2:171785/1‑141
                                                    GCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTCTCACGGCGCCAATTTGTTCCGCCAGCGACTGCGCCGCGTCGGTGCAGGTCAGCGCAGCGGGAACTGGTGCGCCACGTCGGCGACCATC                                                                                                 >  1:175898/1‑143
                                                       ATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGACATGGTGCGACACGTCGGCGCCCATCTCC                                                                                              >  2:455934/1‑143
                                                         CTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGGAATGGTGCGACACGTCGGCGACCAGCTCCTG                                                                                            >  2:299249/1‑143
                                                                   gggtgagCGGGTAAAGGACCGCGATGGCGGGCGGCGGCGTGCAAGGCGGCAAGTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGC                                                                                  <  2:74487/136‑1
                                                                      aagcCGGGTAACGGACCGTGCTCACGGGCGGCTGCGTTCTAGGCGTGAATTTGTGCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCGGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAA                                                                               <  1:610436/139‑1
                                                                             GTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTCTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCCCCTGCCACCTACGCCGCTCGACAc                                                                        >  2:137599/1‑142
                                                                                 CGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCC                                                                    >  1:192468/1‑143
                                                                                     CCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGCCCATCTCCTGCAACTTAGGCAAATCGACACTGCCGTTA                                                                >  1:585440/1‑143
                                                                                                   GGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACCCGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAA                                                  <  2:920195/143‑1
                                                                                                    GCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAA                                                 >  1:23140/1‑143
                                                                                                    GCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAA                                                 <  2:430203/143‑1
                                                                                                     CGGCTTTCAAGGCGTCAATTTGCTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAAC                                                <  2:301209/143‑1
                                                                                                       cCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGG                                              <  2:274395/142‑1
                                                                                                       GCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCCAATCGACAATGCCGTTACCCTTAATATACAGACGG                                              >  2:163762/1‑143
                                                                                                          TTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGCTACCTTTAATATACAAACAGGTG                                           >  2:719705/1‑143
                                                                                                             AAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGAAACTAAAGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGC                                        >  1:421519/1‑143
                                                                                                                     AATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTGATATACAAACGGGTGCGCGAGGTCgg                                >  2:329252/1‑141
                                                                                                                             CCGCCAGCGACTGCGGCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGT                        <  1:166992/143‑1
                                                                                                                             CCGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAAGGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGT                        <  2:192468/143‑1
                                                                                                                              CGCCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTT                       <  1:582587/143‑1
                                                                                                                               GCCGGCGCCCGCGCCTGGTCGGTGCACGCAAGCCCAGCGGGAAATGGTCCGACACGTCGGCGACCATCTCCTGCAACTTACGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTA                      <  1:451608/143‑1
                                                                                                                                ccagggccgGCGCCGGGTCGGTGCAGGTAAGCGTAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAA                     <  1:119872/134‑1
                                                                                                                                CCAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAA                     >  2:156982/1‑143
                                                                                                                                 CAGCGACTGCGCCGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACACACGGGTGCGCGAGGTCAGCAGGCCGTTAAA                    >  1:557679/1‑143
                                                                                                                                     ggaccCGCCGGGGCGGTGCGGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCAT                <  1:325086/138‑1
                                                                                                                                             CGTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTTATATACAAACGGGTACGCGAGATAAGCAGGCCGTTAAACAATGCACACGa        >  2:310918/1‑142
                                                                                                                                              GTGTCGGTGCAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGGCCATCTCCTGCAACTTAGGCAAATCGCCACTGCCGTTACCTTTAATCTACAAAAGGGTGCCCGCGGCACGCCGGCCGTAAAACCACACCCACGCC       >  1:923849/1‑143
                                                                                                                                                  CGGTGCACGTAAGCGCAGCGGGAAGTGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCA   <  2:273610/143‑1
                                                                                                                                                   GGTGCAGGTAAGCCCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCAG  <  2:419586/143‑1
                                                                                                                                                                                                                                                                                                  
AGCCCCTGACTGGTTAGTTTTAGCGCGGGGATCACTGGCAGAGAAAGAAACGCCATCTGAATAAACGGCTCATCGGGTAACGGACCGCATTCACGGGCGGCGGCTTTCAAGGCGTCAATTTGTTCCGCCAGCGACTGCGCCGTGTCGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3845680‑3845530
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtcggtgcAGGTAAGCGCAGCGGGAAATGGTGCGACACGTCGGCGACCATCTCCTGCAACTTAGGCAAATCGACAATGCCGTTACCTTTAATATACAAACGGGTGCGCGAGGTCAGCAGGCCGTTAAACCATGCCCACGCCACCAG  <  NC_000913/3992759‑3992622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.