New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288917 =NA (NA)50 (0.930) 44/282 0.2 98.0% intergenic (‑5/+146) yejO/insH1 pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system/IS5 transposase and trans‑activator
?NC_000913 3526447 = 1 (0.020)intergenic (‑300/‑20) nudE/yrfF adenosine nucleotide hydrolase, Ap3A/Ap2A/ADP‑ribose/NADH hydrolase/putative RcsCDB‑response attenuator, inner membrane protein

GATATTCCGCCTTCAGAGGGTTTGCTATGATCAGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGC  >  NC_000913/3526306‑3526587
                                                                                                                                             |                                                                                                                                            
gATATTCCGCCTTCAGAGGGTTTGCTATGATCAGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACt                                                                                                                                             >  2:638733/1‑143 (MQ=255)
    ttCCGCCTTCAGAGGGTTTGCTATGATCAGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCGGGTGCGACTGACCACGCCTCACCAACTAAGg                                                                                                                                         <  1:478221‑M2/143‑2 (MQ=255)
       ttcgttttgtgtgtttgctatgatcAGCGGTTGCTGTGATTTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaag                                                                                                                                      >  1:265627‑M2/13‑139 (MQ=255)
       cGCCTTCAGAGGGTTTGCTATGATCAGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTCAGgaag                                                                                                                                      <  2:208571‑M2/143‑5 (MQ=255)
                gtggcggagagacgggctaaacaggcggattgaaggcatttacgggagaaaagatcggctcaaacatgaagaactgaaatgactgagtgagccgagaagaatttccccgcttattcgcacctgccCTAAGTAAGATGGGGaaa                                                                                                                             <  1:638554‑M2/18‑1 (MQ=255)
                      taatacgATCATCGGTGGTTGTGATGTGCTTAATGATGCTCACTTTAATCTCCACGCTTGGCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccc                                                                                                                       >  1:227053‑M2/4‑124 (MQ=255)
                       gCTATGATCAGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccct                                                                                                                      >  2:794957‑M2/1‑123 (MQ=255)
                           acggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCAcc                                                                                                                  >  1:618091‑M2/115‑143 (MQ=255)
                             ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgcgtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGCAAAGCATGCGCACCAt                                                                                                                >  1:773498‑M2/113‑143 (MQ=255)
                              tCAGCGTTTACTGTGATGTGCTTAATGATGCTCAAGTTTAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCTACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatga                                                                                                               >  1:37870‑M2/1‑116 (MQ=255)
                               tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaagttccccgcttattcgcaccttccCTAAGTAAAATGGGGAAAGCATGAGAACCATtg                                                                                                              >  1:141340‑M2/111‑143 (MQ=255)
                                ctaaatagcctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATtgt                                                                                                             <  2:528684‑M2/34‑1 (MQ=255)
                                aGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgaga                                                                                                             <  2:273621‑M2/143‑30 (MQ=255)
                                aGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgaga                                                                                                             >  1:674233‑M2/1‑114 (MQ=255)
                                  cGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACGCCACGCTGGCCGATAGCCAACCGCAGAGTCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACCTAGgaaggtgcgaagaagtcccggctgtgaggac                                                                                                           <  1:218884‑M2/143‑32 (MQ=255)
                                   ggTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCAAGCTTGCAGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACGACGCCTGACAGACGAAGgaaggtgcgaacaagtccccgagatgagaaga                                                                                                          <  1:270170‑M2/143‑33 (MQ=255)
                                   aataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagccagccgagaagaatttcccggcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATAAGCACCATTGTGAt                                                                                                          >  1:929641‑M2/107‑143 (MQ=255)
                                      tACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                       >  1:273621‑M2/1‑108 (MQ=255)
                                      aggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGAtttt                                                                                                       <  1:367614‑M2/40‑1 (MQ=255)
                                        gcagaatcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGAtttttt                                                                                                     <  2:259019‑M2/42‑1 (MQ=255)
                                        cTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgttt                                                                                                     >  2:910124‑M2/1‑106 (MQ=255)
                                          tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTa                                                                                                   <  1:619297‑M2/44‑1 (MQ=255)
                                          tgattcaaggcatgtacgggagaaaaaatccgcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTa                                                                                                   <  1:858742‑M2/44‑1 (MQ=255)
                                           gatacaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAg                                                                                                  <  2:843700‑M2/45‑1 (MQ=255)
                                              tgtgCGTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                               >  2:95749‑M2/1‑100 (MQ=255)
                                              tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAgctg                                                                                               >  2:438877‑M2/96‑143 (MQ=255)
                                              ggggcttGATGAGGCGCGAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                               >  1:42076‑M2/4‑100 (MQ=255)
                                               caaggcatttacggtagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAgctgc                                                                                              <  1:371318‑M2/49‑1 (MQ=255)
                                                aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAgctgct                                                                                             >  1:705292‑M2/94‑143 (MQ=255)
                                                  ggcggttacgggagaaaacatcggctccaacaggaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTtagctgctgt                                                                                           <  2:211103‑M2/52‑3 (MQ=255)
                                                  ggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCttt                                                                                           <  1:299839‑M2/52‑1 (MQ=255)
                                                   ttAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACCGACTAAGgcaggtgcgaccaagtccctggtctgcgctcacgtttgtcatctggag                                                                                          <  2:191380‑M2/143‑49 (MQ=255)
                                                   gcagtaacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTg                                                                                          <  2:390964‑M2/53‑1 (MQ=255)
                                                    tAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGAGACACTGACCACGCCTGACAGACTAAGgaagacgcaaacaaatacctgatatgagagcatgcttgcacacaggagc                                                                                         <  1:358023‑M2/143‑50 (MQ=255)
                                                     atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGTtcctttttt                                                                                        >  1:413783‑M2/89‑140 (MQ=255)
                                                      tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTg                                                                                       <  2:260998‑M2/56‑1 (MQ=255)
                                                        tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGc                                                                                     <  2:954908‑M2/58‑1 (MQ=255)
                                                        tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCACGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGc                                                                                     <  2:622056‑M2/58‑1 (MQ=255)
                                                        tacgcgagaaaaaaccaaattaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGc                                                                                     <  2:735761‑M2/58‑1 (MQ=255)
                                                         atgCTCAAGCTGAGCGCCCCGCTTGGCGAGAGCCGACCGCAGAAGCAGGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAGGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatag                                                                                    >  1:905523‑M2/1‑89 (MQ=255)
                                                            ggagaaggattcggcgcaaacatgaagaaaggaaaggcctgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGc                                                                                 <  1:908021‑M2/62‑1 (MQ=255)
                                                            ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTACGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGATTTGCTGCCCTGc                                                                                 >  1:49632‑M2/82‑143 (MQ=255)
                                                              agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTc                                                                               <  2:618091‑M2/64‑1 (MQ=255)
                                                               gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagaagagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCa                                                                              <  2:439076‑M2/65‑1 (MQ=255)
                                                                aataaaacgccAGGGTTGCCGATAGCCAACGGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                             >  2:434875‑M2/5‑82 (MQ=255)
                                                                aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCac                                                                             >  2:118759‑M2/78‑143 (MQ=255)
                                                                aGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCAGGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                             >  2:933346‑M2/1‑82 (MQ=255)
                                                                 gTTAAACTCCACGCTTGCCGATAGCCAACAGCAGGCTCATGTATTGTGTCCGGTGCGACTGACCACAACCAATCAACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcctctggagccatagcacagggg                                                                            <  1:776516‑M2/143‑63 (MQ=255)
                                                                  ttAAGCTCCTCGCGTGCCGATGGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgataggggatcatgtttgtcatctggagccatagaacagggtt                                                                           >  1:220915‑M2/1‑80 (MQ=255)
                                                                  aaaaggagctcgaacatgatgaaatggagtgactgaggcagccgagaagaatgtgcccgcgtattcgcaccttccCTAAGTAAGATGGGGAAAGCAGGAGCACCATTGTGAGTTTTTTAGCTGCTTTGCTGGCCTGCTCacta                                                                           <  1:658848‑M2/68‑1 (MQ=255)
                                                                     aaCTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat                                                                        <  1:350368‑M2/143‑67 (MQ=255)
                                                                       cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGCTTTTTTTAGCTGCTTTGCTGGCCTGCCCACTACTTGc                                                                      >  2:742704‑M2/71‑143 (MQ=255)
                                                                         gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCACTGTGATTTTTTTAGCTGCTTTGCTGGCCCGCTCGCTGCTTGCgg                                                                    >  1:133579‑M2/69‑143 (MQ=255)
                                                                         ccACGCTCGCCTATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                                                                    >  1:76618‑M2/1‑73 (MQ=255)
                                                                          ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCggg                                                                   <  1:743965‑M2/76‑1 (MQ=255)
                                                                          cACGCTTGCCGCTAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga                                                                   >  2:40564‑M2/1‑72 (MQ=255)
                                                                             aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTCGCGGGCTg                                                                >  2:241185‑M2/65‑143 (MQ=255)
                                                                               ttGCCGCTAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                              >  1:506410‑M2/1‑67 (MQ=255)
                                                                               ttGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                              <  2:316110‑M2/143‑77 (MQ=255)
                                                                                catgaagaaatgacatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCt                                                             <  1:224920‑M2/82‑1 (MQ=255)
                                                                                catgaagaaatgaaatgactgagtcagccgagaagaattgccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCt                                                             <  1:728799‑M2/82‑1 (MQ=255)
                                                                                   cGATAGCCAACCGCAGAATAATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcagatgcaggcatagaacagcgctcaccatgggtagtcact                                                          <  1:266564‑M2/143‑81 (MQ=255)
                                                                                    aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACCACTGGCGGGATGGCTGATa                                                         >  2:896374‑M2/58‑143 (MQ=255)
                                                                                       agcaattcgcagattCATGTTTTTTGTGTGGTGCGACTGACTGCGCATGACAGACGAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                      >  2:273946‑M2/8‑59 (MQ=255)
                                                                                       aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATaaaa                                                      <  2:705292‑M2/89‑1 (MQ=255)
                                                                                       aGCCAACCGCAGAGTCGAGGATTTTGTTCGGTGCGACTTACCTCGCTTGATAGACTAAGgaatgtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                      >  2:479082‑M2/1‑59 (MQ=255)
                                                                                       aGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttac                                                      >  1:300439‑M2/1‑59 (MQ=255)
                                                                                           gaaatgaccgagtcagccgagaagaatttccccgcttaatcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATGTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGc                                                  <  1:304399‑M2/93‑1 (MQ=255)
                                                                                           aaCCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaccaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcacaatgagtcaccaacttaccttc                                                  <  1:400531‑M2/143‑89 (MQ=255)
                                                                                           aaCCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAAgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggatcatcatgagtcaacaaactacattg                                                  <  1:178341‑M2/143‑89 (MQ=255)
                                                                                               tgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGCAAGATGGGGAAAGGATTTTCACCTTTGTGATTTTTTTAGCTTCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGtgcgccc                                              >  1:680005‑M2/47‑140 (MQ=255)
                                                                                                gactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGCTGGCTGATAAAAGTGCGATcc                                             >  2:266777‑M2/46‑143 (MQ=255)
                                                                                                cAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga                                             <  2:524638‑M2/143‑94 (MQ=255)
                                                                                                 gctgagtcagccgagaagaatttccccgcttagtcggaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCa                                            <  1:538767‑M2/99‑1 (MQ=255)
                                                                                                     tCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacggtg                                        <  1:57898‑M2/143‑99 (MQ=255)
                                                                                                          tATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcgtctggagccatagaacagggttcatcctgagtcgtcaccttaccttcgccgacagtgatttc                                   <  2:483074‑M2/143‑104 (MQ=255)
                                                                                                           ccgagaagaatttccccgcttatgcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCTAGACGGCGTCa                                  <  1:530229‑M2/109‑1 (MQ=255)
                                                                                                            ttGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatc                                                                                                           <  1:501414‑M2/69‑32 (MQ=255)
                                                                                                            ttGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatc                                                                                                           >  2:501414‑M2/1‑38 (MQ=255)
                                                                                                             gagaagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATGAACGTGCGATCCAGACGGCGCCAGc                                >  1:47337‑M2/33‑143 (MQ=255)
                                                                                                              gcgtccGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtctctgatatgagatcatgtttgtcatctggagccatagaacatggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                               >  2:200821‑M2/3‑36 (MQ=255)
                                                                                                                aagaatttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATGTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCtga                             >  2:201368‑M2/30‑142 (MQ=255)
                                                                                                                   cGGTGCGACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag                          <  2:930481‑M2/143‑113 (MQ=255)
                                                                                                                   aatgtccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCt                          <  2:327528‑M2/117‑1 (MQ=255)
                                                                                                                     tttccccgcttattcgcaccttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTCCTTGCGGGATGGCTGATGCAAGTGCGATCCATGCGGCGTCAGCTGCCCTgg                        >  1:357885‑M2/25‑143 (MQ=255)
                                                                                                                     tttacccgcttatacgcaccggccCGAAGTGAGAGGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTgg                        <  2:148754‑M2/119‑1 (MQ=255)
                                                                                                                         gACTGACCACGCCTGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaaatagaattcagcagtaagcgccgt                    <  1:729440‑M2/143‑119 (MQ=255)
                                                                                                                                   cgacccttccCGAAGGAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTcgc          <  2:294681‑M2/133‑1 (MQ=255)
                                                                                                                                      tGACAGACTAAGgaaggtgcgaacaagtccctgatatgagatcatgattgtccgctgtagccatcaaacaacatagttcatggggcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaag       <  2:701240‑M2/143‑132 (MQ=255)
                                                                                                                                        cttccCTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATg     >  2:93128‑M2/6‑143 (MQ=255)
                                                                                                                                        cttccCTAAGTAAGATGGGGAAAGCATGAGCACCATGGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTTACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATg     >  2:619094‑M2/6‑143 (MQ=255)
                                                                                                                                         ttcccTAAGTAAGATGGGGAAAGAATGAGCACCATTGTGATTTTTTTAGTTGCGTTGCTGGCGTGTTCACTACTTGCGATATGGCTGATAAAAGTGCGATGCTAACGTCGTAAGCTGCACTTGAACAACGCACGCGCGGATgc    >  1:757347/5‑143 (MQ=255)
                                                                                                                                           ccCTAAGTAAGATGTGGAAAGCATGAGCACTATTTTGATTTTTTTAGCTGCTTTGATGGCCTGCTCACGAAGTGCGGGAGGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATgcgc  <  2:100024‑M2/141‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                            
GATATTCCGCCTTCAGAGGGTTTGCTATGATCAGCGGTTACTGTGATGTGCTTAATGATGCTCAAGTTAAACTCCACGCTTGCCGATAGCCAACCGCAGAATCATGTATTGTGTCCGGTGCGACTGACCACGCCTGACAGACTAAGTAAGATGGGGAAAGCATGAGCACCATTGTGATTTTTTTAGCTGCTTTGCTGGCCTGCTCACTACTTGCGGGATGGCTGATAAAAGTGCGATCCAGACGGCGTCAGCTGCCCTGGACCAACGCCTTCGCGGATGCGC  >  NC_000913/3526306‑3526587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.