| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 40 (0.980) | 34/284 | 0.2 | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
TGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTG > NC_000913/1979351‑1979624 | aacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgagagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaa < 2:373086‑M1/8‑1 (MQ=255) acgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa > 2:696078‑M1/135‑143 (MQ=255) cgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccGTAATTAAAt < 2:144870‑M1/10‑1 (MQ=255) gAATACTCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaa < 1:271215‑M1/143‑13 (MQ=255) tggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa > 1:145219‑M1/125‑143 (MQ=255) taatCTAAATGGGATTTTTCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaa < 1:637726‑M1/143‑16 (MQ=255) atCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTACATAATCATCTGCTATAAATAATCACTTTCATGGAATAGAAGATAAGCTATTTTTCAACAGACACTTACGCCACCGCAAACTAAgcaaagtgcgaacaagt > 2:446383‑M1/1‑126 (MQ=255) atCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagt > 2:677541‑M1/1‑126 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGc < 1:273195‑M1/22‑1 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttcaacagctgtaaacaccagccCTAATTAAATACAAAGAAAGGc > 1:395181‑M1/122‑143 (MQ=255) gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGca > 2:239046‑M1/121‑143 (MQ=255) gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgctaattcgcaccttccCTAATTAAATACAAAGAAAGGca < 1:623130‑M1/23‑1 (MQ=255) cgggaTGTTCCGCACAGTCAACAGTACGCACCGTAAATAATCATCTGCTATAAAGAATCGCTTTCATGCAACACCAGATAAGCTATTTTTAAACAGCCCCTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgat < 1:280174‑M1/142‑25 (MQ=255) ggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa > 2:498874‑M1/113‑143 (MQ=255) ggtataagtaggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCaa > 1:476405‑M1/113‑143 (MQ=255) gtctaaataagctcattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAAc > 2:181023‑M1/112‑143 (MQ=255) tctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAAAAAGGCAACAATCAACt < 2:691295‑M1/33‑1 (MQ=255) gTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATAACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCACACAACAAACTAAggaaggtgcgaacaagtccctgatatgaga > 2:566134‑M1/1‑113 (MQ=255) ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgttaat > 2:35693‑M1/101‑143 (MQ=255) aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACACTCCACTTAATGTTCATGAAATGt < 2:52090‑M1/50‑1 (MQ=255) aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGt < 2:275991‑M1/50‑1 (MQ=255) aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGCAAGGCAACACTCAACTTCATGTTAATGACATGtt < 1:475802‑M1/51‑1 (MQ=255) aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATgta < 2:157862‑M1/51‑2 (MQ=255) catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTa > 2:370550‑M1/90‑143 (MQ=255) tCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACCCACTAAggaaggttcgaacaagtccctgatatgacatcatgcttgtcatctggagcc > 2:26364‑M1/1‑92 (MQ=255) ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATAtt > 1:491802‑M1/82‑143 (MQ=255) agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAAAACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAAGTCTTACATATATTaa < 1:208224‑M1/64‑1 (MQ=255) agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgaaccttccCTAATTAAAGACAAAGAAAGGCAACAATCAACTTAATAATAATGAAATGttgtacataagataa < 1:208208‑M1/64‑7 (MQ=255) aatCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgatatcttttttgtcatctggagccatagaacaggg < 1:121469‑M1/143‑63 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttcttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAcc < 2:449383‑M1/66‑1 (MQ=255) cacccggtaaaacatgaagaaatgaaatgacttagtcatccgagaagaatttgcccgcttattcgcacctgccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑Ctt > 1:65909‑M1/74‑143 (MQ=255) cggctcaaacatcaagaaatgaaatgactgagtcagccgaaaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGtt > 1:570623‑M1/71‑143 (MQ=255) tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga < 2:669530‑M1/143‑73 (MQ=255) ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattagcaccttccCTAATCAAATAGAAAGAAAGGAAACAATCAACTAAATGTTAATGAAATGATTTACATCTAATAACCAACTtgttca < 1:250541‑M1/76‑3 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagactttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATg > 1:35446‑M1/66‑143 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGga > 1:333137‑M1/62‑143 (MQ=255) tCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaac > 2:626906‑M1/1‑62 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGaa < 2:478207‑M1/85‑1 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGaa < 2:230394‑M1/85‑1 (MQ=255) aagaaatgaaatgactgagtcagccgagaagaatttccccgtttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAAt > 2:259755‑M1/58‑143 (MQ=255) agaaatgaaatgactaagtcagccgcgaagaattgccccgcttattagcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATc > 1:144870‑M1/57‑143 (MQ=255) aCTGTCGTGCCATACCAGATAAGCTATTTTTCAACAGAGACTTACCGCACAACATACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt < 1:527513‑M1/143‑84 (MQ=255) tttCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagacatagaccagggttcatcatgagtcatcaaattac > 1:4641‑M1/1‑58 (MQ=255) aatgaaatgactgcgtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGt > 2:155924‑M1/54‑143 (MQ=255) tCATGCAATACCAGATAAGCTATTTTTAAATAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct > 2:576390‑M1/1‑56 (MQ=255) gCAATACCAGATAAGCTATTTTTAAACAGACACTGACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc < 2:157964‑M1/143‑92 (MQ=255) gccaGCTAAGCGAGTTGTAAACAGACACTTACCGCATAACAAACTAAggaaggtgcgaacaactccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca < 1:336547‑M1/142‑97 (MQ=255) cAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt > 2:198960‑M1/1‑45 (MQ=255) aGATAAGCTATTTTTAAACAGACACTTACCGCACATGTAACTAAtgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtg > 2:682976‑M1/1‑44 (MQ=255) agctgagacgaagctccccgcttattcgcacattccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTACCCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTCTCTTATaa > 1:530098‑M1/37‑143 (MQ=255) cTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaaagtgcattcac > 1:489864‑M1/1‑37 (MQ=255) tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta < 2:567714‑M1/143‑112 (MQ=255) tttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAGGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGaaa < 2:268807‑M1/119‑1 (MQ=255) aaaagacACTTGCCCCACACAAAAATAAggaatgtaccaacaagtccctgatattagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcg < 1:355597‑M1/140‑116 (MQ=255) tccccgcttattcgcaccttccCTAATTAAATACACAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACACATCTTTACCA‑CGTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAtt > 2:451061‑M1/23‑143 (MQ=255) aGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgccagtgaattcagcagtaagcgccg > 1:305801‑M1/1‑25 (MQ=255) cgcatatacgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTatat > 2:472670‑M1/19‑143 (MQ=255) acTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcaccggtacgcgccgccag > 1:511468‑M1/1‑21 (MQ=255) ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGCTCAc > 1:478207‑M1/13‑143 (MQ=255) cgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAAGTATATGATCACCg < 1:292511‑M1/133‑1 (MQ=255) accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa > 2:273195‑M1/8‑143 (MQ=255) aacaaACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga < 2:654015‑M1/143‑134 (MQ=255) ttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATATTAATGAAATGTTATACAGATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTATCTTATAACTACATTTGAAATTACATGaccaccgagacag < 1:275256‑M1/139‑7 (MQ=255) tcacctaaggaaggtgcgaacaagtccctgatatgagataatgttggtcgtatggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaccgtgaattcagcagtaggcgccgtcgagcccgaaacgaga > 1:391951‑M1/5‑8 (MQ=255) | TGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCA‑CTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTG > NC_000913/1979351‑1979624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |