| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 40 (0.980) | 34/284 | 0.2 | 100% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
CTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > NC_000913/2101608‑2101887 | cTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACCTTCTTTAGGAATTTTTGTTTTATTaagg > 2:168525/1‑143 (MQ=255) ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaagga > 2:117074/1‑143 (MQ=255) tCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaa < 2:49745/143‑1 (MQ=255) aaacgagacTTGATCGACGCCATTTACACGAACAAAATTTGAAAAACGGACCAGCATAGATGATCCGGCGCACCAATCAACCACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATaa < 2:144406/135‑1 (MQ=255) aTCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAAttc < 1:135045/143‑1 (MQ=255) ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATCTTCGTTTTATTAAGGAAGGTG‑CGCATAAGCGGGGAAAtgcttgccgg > 1:621720/1‑138 (MQ=255) cATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGc > 2:413778/1‑143 (MQ=255) acacGCACAAAGTCCGCAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGAATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACt < 1:390150/143‑1 (MQ=255) acacGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACt < 2:68061/143‑1 (MQ=255) acacGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACt > 2:421168/1‑143 (MQ=255) aCCAGCATAAAGGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt < 2:56521/143‑1 (MQ=255) cAGCATACATGATCCTGCGCACCAATCACCAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa < 2:144446/143‑1 (MQ=255) aTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt < 2:455006/143‑1 (MQ=255) gATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTCTTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt > 2:245964/1‑143 (MQ=255) aTCCTGCGCACCGACCATCAGCCTTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt < 1:213230/143‑1 (MQ=21) tCCTGCGCACCCATCAACAACCGTATCAGAATCGATTCTTTCTTTAGGAATTTTTGTTTTATTCCGG‑TGTTGTCTTATAACAGGCACAAGCCCTCTCGGCTGATTCTGCACTTTCAGTTCTTCATGTTTGAGCCGATTTTTtc < 1:508268/143‑1 (MQ=255) gcgcACCAATCAACAACCGGAGCAGAATAGTTACGTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc < 1:502844/143‑1 (MQ=255) aCCAATCAACAACCGAATCAGAATAGATACTAACGTTAGGAATTTTTGTAGTATTAAGGAAGGTA‑CGAATAAGCGGGGAACTTCTTCTCGGCTGTCTCGGTCATTTCATTTCTTCATGTTTGAGCAGAATTTATCTaccaaaa > 2:7234/1‑139 (MQ=18) acaacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAGGGTG‑AGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg > 2:500670/1‑143 (MQ=255) aacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa > 1:310511/1‑143 (MQ=255) tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc > 2:117596/1‑143 (MQ=255) aaTAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAttt > 2:602550/1‑143 (MQ=255) aCTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGt < 1:130328/143‑1 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt > 2:253560/1‑143 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt > 2:134793/1‑143 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGtaa > 2:90910/1‑141 (MQ=255) ttctttAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttc > 2:469750/1‑143 (MQ=255) tAGGAATTTTTTTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGc < 1:221640/143‑1 (MQ=255) ggAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTATGTCATTTCATTTCTTCATGTTTGAGCCGATTTGTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGCTTGTGCGccc > 1:1196/1‑142 (MQ=14) gAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGGATTTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt > 1:49976/1‑143 (MQ=255) aTTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGTATCAGCCTATTTAGACCGTATCTTCTccttct > 1:397043/1‑139 (MQ=255) tttttGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGTCCTTTa > 2:375736/1‑143 (MQ=255) ttttATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCCGTCCTTTCATCTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCTTGACTCAGCCTATTTAGCTCGATTCTATGCCATTTAAGGCGt > 2:686458/1‑143 (MQ=11) ttttATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGt > 2:603335/1‑143 (MQ=34) attaAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTACGGCGTTATc > 1:588985/1‑143 (MQ=14) ttaAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATGTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGACTCAGCCTATTTAGACCGTTTCTTCTCCATTTCAGGCGTTAtac > 1:489564/1‑141 (MQ=255) | CTTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTG‑CGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > NC_000913/2101608‑2101887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |